RNA id: XM_034304152.1


Basic Information

Item Value
RNA id XM_034304152.1
length 5595
RNA type mRNA
GC content 0.45
exon number 23
gene id sgip1b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27384807 ~ 27406398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGtttaattctgttttgtttgttctatTTCTGTTTCAGTATAAAAGACTGAAAGTTAGCTTAATTTCGGCGGACGTGTTTcactgttgcctagcaacagcatTGTCACGactagaggggaaaaaagagCAtcctcgtcatcatcatcatcatcatcacggtGATGCTGAGCGGCTCCTCGGTGATGGTGATGGCGTGTGTGGATGCTGCCTGAGCGcctggagaggaggagaggaggagaggaggagagaagaaagacaGGACAGGAATCCTGCTCGGTGTCGGCTTTACGCGCGTCTGTGCGTCGCTCCGGTGGAATGAGaagctgctgttgctgctgctgctgctgcaaccATGATGGAAGgaCTGAAGAAGCGAACCCGAAAGGCGTTCGGGTTACGCAAGAAAGAGAAGGACACTGACTCCACgGGATCACCAGAGAAAGACAAATCAAAAAAAGCCAACGGTGCTCCAAATGGGTTCTACGGCGAGATAGACTGGGATCGATATAATTCCcctgatgtggatgatgaggGCTTCAGCATCAGACCCGGAGAACAAGGAGGAACACCAGCCAAAGCCAGAACCTTCTTCTCATCCAGTGAGTCAGAGGGTGAGGATGAGCCAGGGAAGAAGTTTAAGATCAAGATCAAGCCCCTGGCACCAGATAACGGCACTGTGTCCACAGTGGATGAGCTGAAGGCCTCTGTGGGCACGCTGGCCATCTCAACCTCGCCTTTGAGGCGCAGCCCGTGTCCACTGAAACGAACTATCTCAAGTGAGGAGATCGCCAGGCCTAGACGTTCCACTCCAACACCGACTCTAACTCCGGGGCCTGGTCCTGACACACCAAGTAAAAGGTTATCAGACAATGCTTCAGCTTTTTTCGGCCCTCCGTTTGAGGCAAACTTCGAAGCACAGAACTCGGAAGTGTTCTTAGCGGAGCCGGAGCTGTGGCGTCTATCAACGCCAAGCAACACCTCCCCGCTGAACAGACGCTTCCCCACAGGAGCTCCACCTCCTCTTCCTCCGAAGAACATTCCTGCAACTCCACCCAGCTACAGATCCAGCTCTCTGGAATCGTCAGGTTATTACAGTGTTGTTCCAAGTGTAAGAGGAGAAGGATCACCTTCGATCTATCGGGACATTCTACTATCAGACCCTACAGGGGGCCCTGCTCTTCCTGACATGGACAATGTATTTGCCCCATCAGATACCCCCAAATCTGAATCAGAGATGTTGCAGTCCAACTGGGTCAGTTTCACTGATGGGACAACCTCCAGGCCTCCACCCCCTGATGAGCCTGCCCCTTCCCCACctctctcatcctcttctgAGGACACACCCCCTACTTCACCTCCTGCCTCATCGCCTCCTCTGCTGCACTCTATCCCTCCACCTGAATCTCCTCCTCCCCCACCCCCAGATTCCCCCCCAGACTCCCTATCTCCTGATGATCTGGCCCAACCCCAACATTCCACATTCCCGCTCCAAGAGTCCAGCTTTTCCATGACTACTCCTCTCACTCTACCTAGCCCTGGCATGCCCCCTCTGCCAACTGTGCCACCTCCTCTGGGGATGCGAGATGATGCCAGAAGAACACCAGACTCTTTTGGGCTAAGAGAGGAAATCCTCTCACTTTCCACCTCACCCAAGGACATTGGGATGGGGGGTTTGCGTGGCACACCACCTCCACTGCCCCCTCTCACCTACAGGAGTGTGGCCGTCTCACCAGGGCCTGGTAGCCgGCCTTCATCACCTGCACGTCCTGGCACTCCTTTATCAGCAGGTAGCCCAATACCACCACTCCCACCCCGGCCATCCTCGCGGCCCAAACTTCCCCCTGGTAAACCAAACGTGGCAGACTTGGCTTGGCCCATCAGCGGTCCTGTCCACTCATGGAGTCCTCCTCCCTTTGCTCCCCTGGCCCGAGCAGAAAGTAGCTCCTCCATTTCTTCCATCACTTCCCTCAGTGCTGCCTCCACACCAACGCTTGGCAGAGAGttcaatctctctgtctcagCCTGTTCCCGAGGACCAAGTCCACTTACCATGGGTCCCCAGGACACTCTACCAGTGGCAGCAGCCTTCACAGAGACCATCAGCGCCTACTTCAAAGGAGCCGACCCCAGCAAgtGTGTGGTAAAGATAACTGGAGAGATGGTTCTGTCCTTCCCAGCAGGCATCACAAGACATTTCTCGAACCAGCCGAGTCCTCCAGTACTGACCTTCACTATCAGCCATTACAGCCGTCTGGAGCAGGTCCTCCCCAACCCTCAGCTGCTCTGCTGTGACCCGATGCCTGCCTTCTCCGACTGTAAAGAGTTTCGGGTGAACATGCCCAACCTGATGGCTCATCTCAAGAAGGTGGCGGACCAGCGGCCTCAGGCTACCTACTACAATGTGGACATGCTGAAGTACCAGGTGTCGGCACGGGGCATCCAGTCTACTCCATTGAACCTGGCACTAAGCTGGCGCGGTGATGCTAACAGCACTGACCTCAGGATAGACTACAAATACAATGCAGAGGCCATGCCCATCCCCACACCCCTCACCAACATCCACTTCCTGGTGCCAGTGGACGGCGGTGTAACCAAACTGCAGGCCATGCTGCCTCCAGCTATATGGAACCCAGAAACCCATAAGATACTGTGGAAGATCTCTGAACTCTCGCAGAAATCAGAAAACGGAGGAGTGGGGGCGCTGTTGTGTCGCTTCCAGCTGGCCGAAGGTCCGAGTAAACCGTCCCAACTGGCCGTGCAGTTCACTAGTGAGGGAAGCACACTGTCCGGCTGCGACTTCCAGCTGCTGGGAAGTGGATACAGACTGTCCCTGATTAAGAAGCGCTTCTCGACAGGTAAATATTTGGCAGATAACTGACGTCagttaacaacaacaactcgTGGAACAGACGGAGTGACAACGCCTTCAAATTCACCACTGAAGAGActtaacaatgtttttaaaattcaaaggGATTCCTTAACTTGGAATTTCACAAGTAGTGTCTCTCCGGCATagaatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaaggcAATTTCAGGACAAATGCAATACAGCAACATTCTTTGCTGGGTTTATGCACGAAGGCAGAGTTTCCTCTCAGAGCTTGATAATATgcgtgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgactTTATATCCTGGGCATGTGCCGATAATCAGGTActtaaaatattgtgatattcacCATGAACAATTCTTAGCGAgggtgcttttatttatttattttttaaagtcacCATAATTTTGTTCATCAGATAAAAGTTTCcgaaaattttaaaaactgttgcGAAGACTGAAAAATTAGTTTACGAACAATAACataattacagatttatttttacttgtattATATGAGGTAAAATAATGTAAAGGGACCTGAAAGTTACTGCataatttgctagctagctctAGATAGATTTCTTTAGATAGCTACTTATGAAACATAGAGATAAAAGATTCATAGTCATTCCCAGGGTGAAATTTAGGAGGATATTTACCTGATTTACCTAATGATACGCTAGCCAGCATTAGGTAACTATCTAGTTAACTAATACTACAAGTTATACCCCATAACTGTTATATTAGCTTGTTTTTTGGGGGGAGGTTcaatttagctagctattttttttttgtaagctaGTTAACATTAGTTGCAAAGCCCCTATATTTGCACAATATTAGATGCAATGCAggataaaatgtcaaaaatgcaTATTTGCTATATGTCAAAAGTGAATGTAATACAACTTGACAGGCACTGTGTTAAACCTGTTAGCTTGATATTTGATACAAATGGTGATAAAGTGTCAGGAGGATATTGTCATTTGTCAGAAGTCATTTCCTGGGTTAAATTTTGTGACCTAATGTAATACAGACTAACTGGCAGTATATGTATCTTGTTAGCTAGCGTTAGTTAACTAGcatttgttagctagctagctacattctCTTGCTCTTTAATACAAAGGGGTAACATTTACtgagatataaaaacataaaatcgGCACATGCCTTGTGATATCGTGTACTGTTAATCCCAGAGTTTGATTAGCCAATATAATAACAGAAACCGGTGAGGTGATGTTCGgttatgttttaaatatttatttccccCCCAAAACAATGCAAATAACATGTGTTATACTAGATAAATGATACTGGACGTCAGATTTACCTCAAATTTTCTAACTAGTTCAACCAAATGttgaacttgaaaaaaaaaaaaaagctgtaaatcaTAACAGAGAAGGAAACGTGGTAGACATCAGATTAGTTTCATATGAATTTTGATATTCGCGTCGGTTGTGAGGTGATGTTTTTGTCTGTGAGGTTGAAAAAGCGGAAATGATGTTCCATAATTAGATATCGATAAACTCTGGAATTCAATTTTCATGCAACATAGCGATGCCTAAACATTTTCTAATCATGTGTCTTGAATCAAAATACTAATAATGTTGATAATTAAGCGACACAGAATCTGTGTCAGGATTTAATGCAGCATTCCGTAGTATGAACTATTTACCGATTTGATTTTCCACAATGTGGACTTTttttaaacgttttttttttttctgtagcaaTATTGATGattgtgtataaatgtaagATAAGAAttgttatatgtatatgtaacgGATATACAGCTTCTACGTATTATCATAAGCCAATGTTTAGtagttgaaaaaaaattcatgaccGCACTTTATTTCAATGTTCCTTTTATTTGAtgttatttttctccatttttttaaaacacacattatttatgAAGTATACAAATGGCCGTTTTATATATCTAAAAGTCAAAACCCCTTGTTTCAGCGTGTACTGTACGATGCTTTGACGTATTCTAGgcatctgttttatttatcgTAAGTCTACTCAAGCAAGAAAAGTTCATACCTCCAAGCCACCAGGGGGTGATAAGAAACACATGGATAAACCTCAGATACCCACCTTGTTATTCAACTCGGTGAGAAAGTTCCAGAAAGATTGCTGTATgtacatacatcatacatcagtCACCCTGGTGGTTATCCGTGATTTGACTTTTAAGATTTCTCAATTCAAGAACTAGTCACATTGCTAGCTACAGTATGTTTTCGAaaagttaaatataatatttagtgTTTACAACTTTTCttgataaaaacacatttcactacatGAAGGCCACAACATGCATTATAGCTGTTGTCTGGTGCCATGCTAGCATAACAATTTTAGGTTAGCAAAACTTTTTCTCGAATGTTCTAGAAACTTTTGGCTGCTTTTTTTGGTTGCAAATTTAATCTGTCACATTTTCTGGCTGTTCCGAGGAGAATTCTTACATAACATTGAGAAATGTACAAAGTTACTGCAACATTTTCAGCCGCATGAACAATTACGTCCCACAGCTGCATACGTAATTTACATTCACCTTCCACTTTAATAGAAGCACCTACACATCTGCTCTTTTATGCAGTTATgcaatcattcaatcatgtggcagcagcacaatgcaaaaaatcatgcacatacaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85328 lncRNA upstream 3735 27380848 ~ 27381072 (+) True G71980
TU85325 lncRNA upstream 13129 27371473 ~ 27371678 (+) True G71977
TU85279 lncRNA upstream 89443 27293356 ~ 27295364 (+) True G71942
TU85275 lncRNA upstream 95102 27287173 ~ 27289705 (+) True G71939
TU85277 lncRNA upstream 100344 27284060 ~ 27284463 (+) True G71941
TU85353 lncRNA downstream 22609 27428419 ~ 27429222 (+) True G72005
TU85362 lncRNA downstream 53860 27459670 ~ 27460197 (+) True G72012
XR_003404004.2 lncRNA downstream 78010 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA downstream 78021 27483831 ~ 27487711 (+) False LOC113540179
TU85494 lncRNA downstream 147317 27553127 ~ 27555706 (+) True G72118
XM_026936714.2 mRNA upstream 13776 27325751 ~ 27371031 (+) True pde4bb
XM_026937006.2 mRNA upstream 66795 27313077 ~ 27318012 (+) True LOC113540484
XM_034303330.1 mRNA upstream 98153 27274172 ~ 27286654 (+) True LOC113539841
XM_026935910.2 mRNA upstream 101078 27274172 ~ 27283729 (+) False LOC113539841
XM_026936094.2 mRNA upstream 114013 27265570 ~ 27270794 (+) True LOC113539951
XM_026937130.2 mRNA downstream 4413 27410223 ~ 27412780 (+) True tctex1d1
XM_026935918.2 mRNA downstream 15475 27421285 ~ 27426694 (+) True bcl6ab
XM_026936528.2 mRNA downstream 35699 27441509 ~ 27447248 (+) True fam78ba
XM_026937314.2 mRNA downstream 54458 27460268 ~ 27466505 (+) True imp3
XM_026936474.2 mRNA downstream 62238 27468048 ~ 27477673 (+) False zgc:55943
XR_003404108.2 other upstream 271553 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 720725 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1009028 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1020574 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 1092023 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 83443 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 150707 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 151955 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 214795 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 215501 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile