RNA id: XM_034303666.1


Basic Information

Item Value
RNA id XM_034303666.1
length 569
RNA type mRNA
GC content 0.53
exon number 5
gene id tsen15
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27474765 ~ 27483833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGTTCGcgtttttaaaagtttttctttctaCTTGGAAAGTGTTGGGAGGAAAAATATCGCGATGGACGAAGAAAATCGAGCAGCGGCTTCGAACTGGATCACTCAGCATCCCGTGTACCAGAACCTGATGAATCTGGGTGTAGACGACAGCGCGCAGGTTTACGGAGCGTTCCTGGTTTACCTCGACCTGACAGAAGTGCGGCGTTGGACAGGCGTAGTCCCAGTGCCGTACCCTGAACTGAAGGCTGTTCTGCTGGAAGGCCGTGAAAAAGAAGGCGAGGTGGTTCAGGTGGTTTATCCACTTCCTGCTCACAGAAGCGTCAGtcacagagattTGAGGTGCATTGTGGGTCGTGGAACTCCCATGCTCCTTTGCGCCGTGGCGTCAGACTCCACGCTTGTGTATCAGCGGCTGAGCGACGGCCTGGTGACCCCTGACCCCCCTGTGGACATCAAAGACCTGGGACGCCGACAACACCGCAAACGCAGACTCcaaacgtgaaaaaaaaaaaaacgctggtCTCGAGTTTGTTAAAGGGCTGAAATTAGCGCTGGGGTCTCACACGG

Function

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0000213 tRNA-intron endonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85454 lncRNA downstream 32353 27444743 ~ 27445114 (-) True G72094
TU85433 lncRNA downstream 70648 27403137 ~ 27406819 (-) True G72074
TU85431 lncRNA downstream 74832 27401670 ~ 27402635 (-) True G72073
TU85300 lncRNA downstream 190769 27286239 ~ 27286698 (-) True G71955
TU85295 lncRNA downstream 193810 27281049 ~ 27283657 (-) True G71952
TU85953 lncRNA upstream 85411 27569244 ~ 27970795 (-) False G72517
TU85956 lncRNA upstream 395705 27879538 ~ 27970795 (-) True G72517
TU85958 lncRNA upstream 410680 27894513 ~ 27970795 (-) False G72517
TU86050 lncRNA upstream 429037 27912870 ~ 27958488 (-) True G72607
TU86051 lncRNA upstream 490637 27974470 ~ 27980336 (-) True LOC117597146
XM_026936527.2 mRNA downstream 21754 27447255 ~ 27455713 (-) True slc35a3b
XM_026936529.2 mRNA downstream 35973 27433692 ~ 27441494 (-) True cmpk
XM_026937061.2 mRNA downstream 44789 27428420 ~ 27432678 (-) True LOC113540508
XM_034303470.1 mRNA downstream 44898 27415267 ~ 27432569 (-) False LOC113540508
XM_026937060.2 mRNA downstream 44898 27428420 ~ 27432569 (-) False LOC113540508
XM_026936469.2 mRNA upstream 944 27484777 ~ 27494927 (-) False acbd5b
XM_034303665.1 mRNA upstream 944 27484777 ~ 27494797 (-) False acbd5b
XM_026936467.2 mRNA upstream 944 27484777 ~ 27494237 (-) True acbd5b
XM_026936170.2 mRNA upstream 37857 27521690 ~ 27531090 (-) True anxa13l
XM_034303959.1 mRNA upstream 63990 27547823 ~ 27555987 (-) True pcyt1aa
XR_003404034.2 other downstream 44789 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 81244 27396151 ~ 27396223 (-) True trnat-ugu_4
trnat-ugu_3 other downstream 82038 27395357 ~ 27395429 (-) True trnat-ugu_3
TU85245 other downstream 273281 27203783 ~ 27204186 (-) True G71909
TU85159 other downstream 376609 27096602 ~ 27100858 (-) True G71832
XR_004578066.1 other upstream 63919 27547752 ~ 27555986 (-) False pcyt1aa
trnat-ugu_7 other upstream 137223 27621056 ~ 27621128 (-) True trnat-ugu_7
trnat-ugu_9 other upstream 140903 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_003404039.2 other upstream 532231 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 752353 28236186 ~ 28236267 (-) True trnas-uga_1

Expression Profile