RNA id: TU85492


Basic Information

Item Value
RNA id TU85492
length 1576
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC113540592
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27556085 ~ 27559427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCGCGTCCGCGTGGTGGAGAGCAGCATGTGCGCGTGCCGAAGTGGTCTCGTGGATCAGCATGGTAGGAATTGAAAGCCTGATTATTCAGACCATGAGGACAGCTGAACTCGCCATGTTCCTGTTAAACACAGgtggatgatgatgatgatgatgatgaagtacAGCGGATGGAAGCGACTGCAGCGTTCAAACTCCATTTACCTTCACGTTGAATGATTTATAGTGGAGCGTTTTATCCGATTATGGGTGAGGTACATGATGTGTGTCATGAGCTATAGctttgctcacaaactgccaaaaataaattaacactaaaGTATGAAAGtttcagtacaaaaaaacatcaaatccGCTACTGACAATCCACTTGTAATTcttaaaataagaaatgttaAGTGGATTGTGATGCACTTGATCACGATATCGATATCAGATGGTCGTATCGCTCAGCCTCGCTCTCGGGCTTCCGCTTAGTAGTACGCACTTCGAGTGTTAGTAAAATCTCTCCAGTAGTAACACAGAAGATCtgaagccattttttaaaattaatattaagcTGAAGTCTTTATTGGTTCAGAAATAATCATGTGATTTAAGCCAGGTTTACTCTGTACCATCTTGCTGACACAATTTGCAcatcgtaaaagaattcttCGCTCGTGAGTTGAAATCGGTGTCTAACGACATGTTATGTGACTTGGTTGTCAGTGTGAGGAATTTCGGAGTGTGAGCGCTGCTGCTATGACAGTCaactaaaatccaccaataggagggcAGCACAGCTATGCGTACAGTAGCGGCGATGGAGAAAAACGTAACATGCTAACGAACAGAAAAATGGCGTTATTACCTCACACTCGCTTCATGTTTATGCAAGCCTGTTGTCTGCACGAGTTGATATCCTGGTGCTCAATTACGTAAGCAGAATGTAGTCATTCTCTCTAAGCACAGATCTGCCGGTAGAGGATCTTCTTTAGACGACACGCGTTATCATaaagtctgttatagaattcagcccAGATTTTCTTGGGATCTCGAGTACGCAAGTATTTTGTGACgggtaataaaataaaataataaaagtgctgGAATCATGTAGTGTGAAACATGATGGCGTTTAAAACACTCAGATGCTTCACTCAGTCAGGTTCAGTTTAGCTGATGATTAATGATGACTACGTAGGTGGGTTATGTCTCTGCTTTGTCGCTTATGTATTAATGTGATTTCTAATAAAGATTGATCTCCCAGTGCtctgggtgcgtgtgtgtgtgtgtggtttcatcCTGCGGTTGAgcttgaaagagagagaaattgtgtatgtgactcattattaaattaaaaagcacAAATCAAGATGTTAAGAATTTCCACTGGTTTAAAAGACAGTAACCAGAGTAAGAGCTGGGTTCTAACCTGAGCAAGTTTGATAGCTGAACTCTTGGAGACTAAGGGGTCAAGTCACCTTTGACAACTTGAAAAGTGAATATAAAATGATGTAGAAAGATGAATATAATAGATGGATATAAACTGACTAAGCTTTATATTTGTGAATTATGAAACAGACACTGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85494 lncRNA upstream 498 27553127 ~ 27555706 (+) True G72118
XR_003404004.2 lncRNA upstream 68493 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA upstream 68493 27483831 ~ 27487711 (+) False LOC113540179
TU85362 lncRNA upstream 96007 27459670 ~ 27460197 (+) True G72012
TU85353 lncRNA upstream 126982 27428419 ~ 27429222 (+) True G72005
TU85626 lncRNA downstream 452317 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 555024 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 743424 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 756977 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 909521 28468948 ~ 28471765 (+) True G72336
XM_034303993.1 mRNA upstream 10075 27534676 ~ 27546129 (+) True ap2m1a
XM_026936183.2 mRNA upstream 39000 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_026935807.2 mRNA upstream 48005 27495848 ~ 27508199 (+) True abi1b
XM_026935808.2 mRNA upstream 48005 27495848 ~ 27508199 (+) False abi1b
XM_026936475.2 mRNA upstream 78531 27468283 ~ 27477673 (+) False zgc:55943
XM_034304070.1 mRNA downstream 2722 27562149 ~ 27582022 (+) True dvl3a
XM_026936880.2 mRNA downstream 69021 27628448 ~ 27639961 (+) True prtfdc1b
XM_034303530.1 mRNA downstream 89387 27648814 ~ 27698656 (+) True arhgap21b
XM_034303531.1 mRNA downstream 89387 27648814 ~ 27698656 (+) False arhgap21b
XM_034303532.1 mRNA downstream 89387 27648814 ~ 27698656 (+) False arhgap21b
trnat-ugu_5 other upstream 66879 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404108.2 other upstream 442950 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 892122 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1180425 26353189 ~ 26375779 (+) True LOC117597079
trnat-ugu_6 other downstream 61178 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 61884 27621311 ~ 27621383 (+) True trnat-ugu_8
TU86406 other downstream 1314929 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 2060566 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 3186704 30746131 ~ 30767132 (+) True G73944

Expression Profile