RNA id: TU85494


Basic Information

Item Value
RNA id TU85494
length 325
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G72118
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27553127 ~ 27555706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAATTACGGtctaaacagctttttttttttgaagcccTGCATTATTACCACGGTGTGGCGTTTAAATTTGCCCGTCGTGTCTCCTTCCTCCGTCTCTCCATTCGAGtcatctctcctcctcttccggGAGAGAGCGCGTGATGAAGCGTGAGCGTCCATTCCCACCACCTGCAGGTCCTCGAAATCCTGCCTCGTCCTGGCGTTTAAATGTGCACTTAGTTAGATCTTCTGCACAATTATCATGAATAAATGCGCTTTTAATAGAGACACTTGACGCTAGCGAGCGCACGACTTCACCCTGCTTGACAGCTAAGTGCCAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404004.2 lncRNA upstream 65416 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA upstream 65416 27483831 ~ 27487711 (+) False LOC113540179
TU85362 lncRNA upstream 92930 27459670 ~ 27460197 (+) True G72012
TU85353 lncRNA upstream 123905 27428419 ~ 27429222 (+) True G72005
TU85334 lncRNA upstream 146729 27405579 ~ 27406398 (+) False sgip1b
XR_003404048.2 lncRNA downstream 379 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA downstream 498 27556204 ~ 27559102 (+) False LOC113540592
TU85492 lncRNA downstream 498 27556204 ~ 27559427 (+) True LOC113540592
TU85493 lncRNA downstream 498 27556204 ~ 27559013 (+) False LOC113540592
TU85626 lncRNA downstream 456038 28011744 ~ 28012459 (+) True G72236
XM_034303993.1 mRNA upstream 6998 27534676 ~ 27546129 (+) True ap2m1a
XM_026936183.2 mRNA upstream 35923 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_026935807.2 mRNA upstream 44928 27495848 ~ 27508199 (+) True abi1b
XM_026935808.2 mRNA upstream 44928 27495848 ~ 27508199 (+) False abi1b
XM_026936474.2 mRNA upstream 75454 27468048 ~ 27477673 (+) False zgc:55943
XM_034304070.1 mRNA downstream 6443 27562149 ~ 27582022 (+) True dvl3a
XM_026936880.2 mRNA downstream 72742 27628448 ~ 27639961 (+) True prtfdc1b
XM_034303530.1 mRNA downstream 93108 27648814 ~ 27698656 (+) True arhgap21b
XM_034303531.1 mRNA downstream 93108 27648814 ~ 27698656 (+) False arhgap21b
XM_034303532.1 mRNA downstream 93108 27648814 ~ 27698656 (+) False arhgap21b
trnat-ugu_5 other upstream 63802 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404108.2 other upstream 439873 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 889045 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1177348 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1188894 26353189 ~ 26364233 (+) False LOC117597079
XR_003404069.1 other downstream 811 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 2059 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 64899 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 65605 27621311 ~ 27621383 (+) True trnat-ugu_8
TU86406 other downstream 1318650 28874356 ~ 28912104 (+) True G72873

Expression Profile