RNA id: TU85711


Basic Information

Item Value
RNA id TU85711
length 1640
lncRNA type read_through
GC content 0.35
exon number 2
gene id insig1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28302851 ~ 28383422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaaagaTGGTGGCCAAATACGTGCTTCATTGTTTcgatttttcattttgtgctggaaaatggtATTAAATGAAAAGGGAAAAGTTTCAAGGccgcagaaaaaaaatgtctgccaTCCAAAGAGGAGGCGTAAACGTTTGctaatattgttattactattaataacaattattacTAGTGTTACTTTGCAGTGAGACTCCTTTGCCAAATGAAATATTATCGTTTAATAACATTCTATATGATGTGTCATGATGCAAGGTTAATTCATGTACGCCTTTATAGAGCACTAGGTATGTTTCAGTTATCAATTATGCGATATATATCGTGATGTTCAACATGAACATTCAGAGAAAATTAATTCCGAGGATGGAATACAGACTTACGATGAATAatcaaagattttaaaaaatgttacatgtttaatatcatgatatttttgtgaattGGCACATGTGTACACTTAAATACACACATggacatgtttcttttttatgaaggtcctttgtttaaaaaaaaaaaaggaacattttttttattgcagccTTGAAGATTTTGCAATCTGTGATTGCATGTGTATTATAGAATGAGTGcttttgtcacttttttcttctccacTTTGTTCATTGCGTTTTGCTGACCATGTGTAATCCATTCTTCTTCTAATCGCACAAAAATGTGCCGTATATTCTGGAATGTGAGGTCAAGTTCACAACGGGACTACAAACCTCAGTTGTTTAAAGATGCTCCGCCCAGCACAGGCTCTGATTGGCTCACATGTGGTTGCGCCAGAGCTGGAGAACAAGGCGTAATATATAAAGttgttggcaagacttcgcaaaaaTTAAGATGCAAGCAGCAGTTTTTAGGACTATATAGCATTTCCTAGGTTAGATTTACACAACAAttgtatatatgttatatatttcttttgcaTTAGcttaaatatttgcatattttggcAAGACGTAGTATCAGGAACATCAATAAACTGCTTGAccagatttaaaataattaaaactcatcagccaatcagaaaaatatttttggtgtcCTTGCTATATAGCAGATTTATAGTGAGAATTTACGAGGTGCGCCTTATATTCTGGAAAATACGGCAATTTTTGAACTTGAGCAAAGATTTTAAGTGCAATCAGGTATAACGAGCCttgatatttattttgattttattttttatttcgtAAAGGATCATATGCAGTACGAAGAAGCAATAACTCACATTCAGAGGTAGTTTACGTTCACGCACAAACTGATTTTAATGACGCCAATGACCACTTCTACTGTTCTGAGTAAAAAGTGTGTATCGTCACGTTTTACCTGTTGAGTAGTATTAGTAAAATGTTTGATATGGAGGTGTGTGACTTTATTaaggccgtgtgtgtgtgtgtgtgtgtgcacagaagCGGCTGGAAGAGAACATATTAACACGACTCGCTAACAGGACTTCAGTTCAGGGAAATGATGAAGACTCGACATGAACgaaagctttattttatttgaggaACTTTTTttgacttgtttttctttttgtctgtgtttactGTTGTAGTTGCATGATTTCTGCTATGCTGTCTATAAAATAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85674 lncRNA upstream 180709 28114451 ~ 28122142 (+) True G72276
TU85626 lncRNA upstream 290392 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 743424 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 743741 27556085 ~ 27559110 (+) False LOC113540592
TU85742 lncRNA downstream 85540 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 191514 28574922 ~ 28578950 (+) True G72378
TU85820 lncRNA downstream 236416 28619824 ~ 28637201 (+) True G72404
TU85824 lncRNA downstream 239832 28623240 ~ 28627973 (+) True G72408
TU85843 lncRNA downstream 268006 28651414 ~ 28651621 (+) True G72422
XM_026936375.2 mRNA upstream 42597 28253028 ~ 28260254 (+) True LOC113540125
XM_034303981.1 mRNA upstream 150346 28112849 ~ 28152505 (+) True zbtb41
XM_034303982.1 mRNA upstream 150346 28139717 ~ 28152505 (+) False zbtb41
XM_026936391.2 mRNA upstream 150346 28139718 ~ 28152505 (+) False zbtb41
XM_034303983.1 mRNA upstream 191844 28104505 ~ 28111007 (+) True pfn2l
XM_026936218.2 mRNA downstream 10528 28393936 ~ 28400141 (+) True en2a
XM_034303331.1 mRNA downstream 10528 28393936 ~ 28400141 (+) False en2a
XM_034303603.1 mRNA downstream 60370 28443778 ~ 28468852 (+) True rbm33a
XM_026936568.2 mRNA downstream 174870 28558278 ~ 28588619 (+) True rnf32
XM_034303286.1 mRNA downstream 174870 28558278 ~ 28580624 (+) False rnf32
trnat-ugu_8 other upstream 681468 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 682174 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 744949 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 746203 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 813526 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 490948 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1236585 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2362723 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2362723 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2678322 31061730 ~ 31097888 (+) False spsb4a

Expression Profile