RNA id: XM_026937188.2


Basic Information

Item Value
RNA id XM_026937188.2
length 3424
RNA type mRNA
GC content 0.41
exon number 6
gene id insig1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28302851 ~ 28383422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGTCTGAACGGTGGGAAGGCAAACATTTGAGAAGATGATGATGTGAGCACATGGGGAGGAAATAAATCAGCTGGAACCCCATTCAGAGGCTTTATAAGGTGCAAACGTGGACAGAAGTGGAATTTATCTTTTAGACTTTTATCTATTTTGTTTgtggacagaaagaaaagacgTCTTGTCAGCAAAGtgcCAAATGCCGACACTAGAGGACCGTTGTTGGAGCTGCACCGGTGTGAAAGTGAAAGATTTTGCAGATTTGTGGATCTGGATGGCGTCTAAAATGGGTGAAATGATGTCCATGGTCACGTCAATGCTACTCCATGTTCGCTCTGCTAATTTAATCCGTCGTGGACTTGTCTTATTTGCTGTCGGCGTGTTTTTAGCATTGGTGCTTTATTTCCTGCAAATACAACGAAAAGACGCGTTGTTCCCTGATGAAGTGCTGGacactttgttttcttcagCCTGGTGGATTCCTCTGTGCTGCGGAACAGCTGCCGCTGTGGTGGGTTTGTTGTATCCGTATCTGGACAGCCATCTTGGAGAGCCGCACAAGTTTAAGCGCGAGTGGGCGAGTGTCATGCGCTGCATCGCTGTTTTCGTCGGCATCAACCACGCCAGTGCCAAGCTGGACTTTGTGAATAACGTTCAGCTGTGTCTCACTCTGGCCACTCTGTCTCTGGGTCTGTGGTGGACGTTTGATCGCTCCAGGAGTGGATTCGGTTTGGGCCTCACCACAGCGTTTTTCGccacactcatcacacagctGTTAGTCTACAACGGCATCTACCAGTTTCCATCTCCGCAGTTGGGCTACGTTCGCTCCTGGCTGCCCTGCATCTTCTTCTCTGGAGGAGTGACGGTGGGGAACATCGGCAGGCAGCTAGCCATGGGTACGAATGAAAAACCTCACAATGACTAGCGAGCAGCACAGATGGATCCTAAATACCACAGCTAGGAAGAATGAGACGTTTCCCGTCGCATTTCCACTCCCTCCTAATCTCTCGTTCGTGTTAATAAGAGAAAAGGCAGGCGGACTGAGTGTGTCCTACGGACACGAGGCTGCAAAATGGACAAAACAGAACTCATCATCGATGTTAACGTCACCACTCGAGTGTTCACGATGGCGTGAGAGACTGTTATGGGGTTAACTTCCTGTCAAAAAAAGTAACTGTGCATGAGTGCacgttgttgttattttataaatCCCAAGTCCAGAGTTGATTTTGGTAACTTTGGCAACGTTACGCCTTACATTCCGTGcagcgtttttttgttttgtttgtttgtttgtttgttttttaggtaagctccgccccctcatCTTCCTGATGCCATCCACTTGGCCTCACCCCCTCAAATCTCTACAGCCATCCACCTGGCTCCGCCCCACCACCATCCTACTGCTATCCACGTGGCTCCTCCCCCCATCTCTCTAGAGACCTCCACTGGCTCCACCCCCTTAAAATGTTACGATCTGGAGTTTTCACTCCAAAAGTGATTCGTAATGGCGCGATTGAGGTTTCGAGTCCGTAATATGAAGACGATTTATGAAACCGACGATGGATTTGTGATTGGTAAACTCGTGACCTCGTCATCACAGTTACTTTGTAAAAGAACTCCATAGAGTTATGTAGCACAACTGGGTTCGGTTGTTCACGTATACAGTGTGTTAGCCTCATAAGCgtgcgtgtgagtgtgatattgagATATACTGCACATCTAGAGATCTAGACTGAATCTGAAGGAGAGATGAGTgcattgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggaaaagaTGGTGGCCAAATACGTGCTTCATTGTTTcgatttttcattttgtgctggaaaatggtATTAAATGAAAAGGGAAAAGTTTCAAGGccgcagaaaaaaaatgtctgccaTCCAAAGAGGAGGCGTAAACGTTTGctaatattgttattactattaataacaattattacTAGTGTTACTTTGCAGTGAGACTCCTTTGCCAAATGAAATATTATCGTTTAATAACATTCTATATGATGTGTCATGATGCAAGGTTAATTCATGTACGCCTTTATAGAGCACTAGGTATGTTTCAGTTATCAATTATGCGATATATATCGTGATGTTCAACATGAACATTCAGAGAAAATTAATTCCGAGGATGGAATACAGACTTACGATGAATAatcaaagattttaaaaaatgttacatgtttaatatcatgatatttttgtgaattGGCACATGTGTACACTTAAATACACACATggacatgtttcttttttatgaaggtcctttgtttaaaaaaaaaaaaggaacattttttttattgcagccTTGAAGATTTTGCAATCTGTGATTGCATGTGTATTATAGAATGAGTGcttttgtcacttttttcttctccacTTTGTTCATTGCGTTTTGCTGACCATGTGTAATCCATTCTTCTTCTAATCGCACAAAAATGTGCCGTATATTCTGGAATGTGAGGTCAAGTTCACAACGGGACTACAAACCTCAGTTGTTTAAAGATGCTCCGCCCAGCACAGGCTCTGATTGGCTCACATGTGGTTGCGCCAGAGCTGGAGAACAAGGCGTAATATATAAAGttgttggcaagacttcgcaaaaaTTAAGATGCAAGCAGCAGTTTTTAGGACTATATAGCATTTCCTAGGTTAGATTTACACAACAAttgtatatatgttatatatttcttttgcaTTAGcttaaatatttgcatattttggcAAGACGTAGTATCAGGAACATCAATAAACTGCTTGAccagatttaaaataattaaaactcatcagccaatcagaaaaatatttttggtgtcCTTGCTATATAGCAGATTTATAGTGAGAATTTACGAGGTGCGCCTTATATTCTGGAAAATACGGCAATTTTTGAACTTGAGCAAAGATTTTAAGTGCAATCAGGTATAACGAGCCttgatatttattttgattttattttttatttcgtAAAGGATCATATGCAGTACGAAGAAGCAATAACTCACATTCAGAGGTAGTTTACGTTCACGCACAAACTGATTTTAATGACGCCAATGACCACTTCTACTGTTCTGAGTAAAAAGTGTGTATCGTCACGTTTTACCTGTTGAGTAGTATTAGTAAAATGTTTGATATGGAGGTGTGTGACTTTATTaaggccgtgtgtgtgtgtgtgtgtgtgcacagaagCGGCTGGAAGAGAACATATTAACACGACTCGCTAACAGGACTTCAGTTCAGGGAAATGATGAAGACTCGACATGAACgaaagctttattttatttgaggaACTTTTTttgacttgtttttctttttgtctgtgtttactGTTGTAGTTGCATGATTTCTGCTATGCTGTCTATAAAATAAAACGAAGTTGAAAGTATC

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85733 lncRNA upstream 48133 28316404 ~ 28328181 (+) False htr5ab
TU85674 lncRNA upstream 254172 28114451 ~ 28122142 (+) True G72276
TU85626 lncRNA upstream 363855 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 816887 27556204 ~ 27559427 (+) True LOC113540592
TU85491 lncRNA upstream 817212 27556204 ~ 27559102 (+) False LOC113540592
TU85742 lncRNA downstream 85526 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 191500 28574922 ~ 28578950 (+) True G72378
TU85820 lncRNA downstream 236402 28619824 ~ 28637201 (+) True G72404
TU85824 lncRNA downstream 239818 28623240 ~ 28627973 (+) True G72408
TU85843 lncRNA downstream 267992 28651414 ~ 28651621 (+) True G72422
XM_026937128.2 mRNA upstream 38141 28316404 ~ 28338173 (+) True htr5ab
XM_026936375.2 mRNA upstream 116060 28253028 ~ 28260254 (+) True LOC113540125
XM_034303981.1 mRNA upstream 223809 28112849 ~ 28152505 (+) True zbtb41
XM_034303982.1 mRNA upstream 223809 28139717 ~ 28152505 (+) False zbtb41
XM_026936391.2 mRNA upstream 223809 28139718 ~ 28152505 (+) False zbtb41
XM_026936218.2 mRNA downstream 10514 28393936 ~ 28400141 (+) True en2a
XM_034303331.1 mRNA downstream 10514 28393936 ~ 28400141 (+) False en2a
XM_034303603.1 mRNA downstream 60356 28443778 ~ 28468852 (+) True rbm33a
XM_026936568.2 mRNA downstream 174856 28558278 ~ 28588619 (+) True rnf32
XM_034303286.1 mRNA downstream 174856 28558278 ~ 28580624 (+) False rnf32
trnat-ugu_8 other upstream 754931 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 755637 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 818412 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 819666 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 886989 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 490934 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1236571 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2362709 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2362709 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2678308 31061730 ~ 31097888 (+) False spsb4a

Expression Profile