RNA id: TU85824


Basic Information

Item Value
RNA id TU85824
length 4692
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G72408
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28623240 ~ 28627973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACCTGTACATATCTCCTGCTGGACGTTTGGTGGTTTTCGATCGGTGAGGTTTGGGCTCGCCTGCCAGGTTGATGTCTGAAAGTGACGAGAAATCAGTGATTAATTTAAGATTACAACAATAATTTAGAGAAatcttaacaacaaaaaactgaACGCAACGTTACATTTAATTCTCGCATTGTTAAATTTATTCTCAAGAAGATACTGAATTTATTCTCAAAACATTATTGGCATGGTTACATTTTTTACAAGATTTTATTTGCATCGTTaaaatttatatacaaaaaatatcaaatttatGTACAAGAAGTTACTAGCATAGATAAATTTATTCGTAAGAAATTACTAGCATAGATAAATTTATTCGTAAGAAAATACTAGCATAGTTAAATGCATTCGTAAGTTACTAGCATTGGCAAATTTATTTGAAAGACGTTAGACAAAGTTGGATTGTTAAATTTATTCGCAAATAGTTACGTTTAATTGCAGAAAGTTATTCAAGCattgataaaaatgtattcacaTCATTAAATTTAGCTACCTAAGGTAACAATGCTccacaaacaaataacaaaaatgtagGTGACTGAAGTGATCGAAGTGACATTTCGTATATTAACGCAAGCCTACGTTAGCTAAGTGTTACATTTTGTGCACCATATTTTCTGCAACACTAGCCTGTGTGTGACGATTTACCGATGTTCGCTTGTATTGAGGAGCATTAGTCAAAAAGTTAAGGTAGCTAGACTATTTTGTTAAACGTTAGCTAGCTGTAGCAGATAGCTCGATTTAAGTTGTAATGTCTGGGGCTTGGGTGAGTCGCCCCTCCTGTGTCATCACCCCGCCGATCTACTGATGTATCAAACATTGAACATACAAGTTATGATCCTATAGTGAGAAAAACCACTTCAAGACTGAAAGATCGATAAGGTGAAAGGTGATCGGAAAGTAAAAGCGTAGGGTACGTTCTCACCCAGGACTTGTCCGACAATCATGCGTCCGTCCTCTCCGGCCACGGCGGCTCGAGCGTTCCTCTCGTTCGAGTACTGGACGAAAGCGTAACCTTTGTGGACGGAGCAGCCCACGATCATGCCGTACTTGCTGAAGATGGCCTCCACGTCGGCTTTGGTCACCAGCATGGTGTTCAGGTTCCCAATGAAGACGCGCGAGTTCAGAGAACGAGGGTCCGTCTTATTGGTGACGTTGCTGGCCATATCGCTTGGAGAGCGGCTAGACAAAAATACAACCTCTATCActgattagaaataaaaatcaatatctAATGACAacactaaacattttactgacTTTAGGAAACAGCTGGAGCTATTtccacatattattattattaatactataatTATTCCACAATGCTAATGATTTTGCGATTCTGATCGGTCaggaagtgttgattaattttctattatagCACCATAGTTTACATTAGGGTACATTAACGCACTCGTtaaatacgttatcgtttctatggtaacagttcattcacagggacttgcacaGCAGACACTACAcattaagagttttttttttgtttgtttaaatttacgTACTCGTTGATATGGCgaaactttctgtaaggagacgtttacattaaaatttttggaaggagtctccagtgccagtcagagataaagctgtaaataaATTTTCCAACACGGCAAGCCATCTTATTACCTTCCAGGATGatagaatgactgtttatagcgaCTATAACGTAACCGATAACAGACgttaacttgttttatggacattccacaacattaaatgtaattataaacaggTTAAACACCTGGTACcatgtatcattctttaataaacaaaaattgttagcattggcaggttactgtggtgtaagagctATAAAACGCTTCAGAATAtgttgttactggaaaataatcaacttcaagctGATAACAGTATCCCAGCTCAATCAccgttaattattttcctctaacagcatgacacacagtgtgttattccttatataatggtttttttttttggtttttttttaaaccaacttTAGCATGATTAGAAAGAAAtcataaatgaatgtttttcctGTGGGAACCGTGACAATCCTGAGCACTGggaactaaaaaataaaataaataaatcaaacatttttttttttaaatacatcaatttttttttttttaagttttcacTCActccatggtgtgtgttggcCACTCGTCTGCAGTCGTCCCACAAGATTTACACTGAGGTGAAAAAGCTAGGCAGTTAATTAACCACACACAGTCAATTAGCTCGCTAATGAATTAAACACAGGTGGTCATTAGTGCGCTAGCTAACAGGAACCAGTCAGTTTCTGCATTTTGTTTCAGTCAGAAAAGTGTAAAACGAGAAAAAACTAAACAGCTGTAATGAATTCACTATGAAAGGATCGCTGTTGTGCCTTTACTTTCTGTCtggtttgatttattttatgttttttactcAACAAAATATAACTTCAGTGAAATATTTGATCATAAGCACAGAATGTTAGCATtacacttagaaaaaaaaaatcctctcagaaactAGCAAATTTAGCCATCCAGTCAATTAgctagttaaTTAATCCTCAGTAGTCAGTTGACAATCACTAACCAACATCATTGTTCTAGTTAATTAACGTTAGCGAACCAATAGCTATGTAGCTATTTACCCATAAGCAATTGATTAGCTTTAGGTAATTGGCTAATTAGCTATCTGGTTCATTACATTAATTGGCCATTAGCATTATCAAGTTAGCTAATATGCTGTAGCTAGTAAATTAGCTTAGATAGAGAGCACTATATTGTAGCTTTcgctatgtagtgcactatatagggaaTACACGGCCATTTTGGATATAGCCATGTAGTACACTAGAACAAGGTATAAAAGctatatatagtgcactatatagggacCAGGAGGGTATTTTGGATACAACCATGTCCTGCACTATAAAGATTGTAAAATCTGTTATTTCAAACAAGATGTAGATTTAGTTACACagccatatagtgcactatatagtgagtaAAAGCCAGATTGGGGTTTctgacatgtagtgcactagaacAAGTGTGAAAGGCATCATTTCAGACCAtttatagtgcactatgtagggagtAGGGGGTCATCTTGGATACAGACATGTAGAACATGATACAAGGTGTAAAAGCCATATACAGTGCACTATGTAGAGAGTACAGGAGCCATTTTGGGTTTagccatgtagtgcactagaacAAGTGTGAAAGCTGTTAGTTCAAAATATATACATGCAAGTCCCCTATATAGGGTACAGGGGGGCATTTTGAATTTACACCCACTGAGAGCACTATATAGGAAGTATGCAGCCATTTAGAATTTAGCCATCTAGTACACTACAACAAAAAGAGTAAAGCCAATATTTCAAGCCACTctaagtgcactatatagggaaTAGGGCGCCATTTTGAATTTACACCTACTGAGAGCACTATGAAGAGTGTACAAGCCATATATCGTGCCCTATATAAGTTACAGGGGGCCATTCTGGGGTCActcatgtagtgcactataaaAAGGGAGTAAAATCCATTTTTTCCAAActacatgtagtgcactatatagggaaTAAGGGGCCATTTTGGGTTCACTCATGTAGTACACTATGAAGGgaataaaaatccattttttaaactatataGGGAGTACACAGCCATTTAAGATTTAgccatctagtgcactacaacAAATAGTGTAAAGCCAATATGTCAAACCACTcaaagtgcactatatagggagTAGGGGGGCCATTTTGGATACagccatgtagtgcactatgaaGAGTGTACAAGCCATATATCGTGTTCTATATAGGGTACAGGGGGCCATTCTGGGGTCActcatgtagtgcactataaaAAGGGAGTAAAATCCATTTTTTCAAACTATATAGGGAGTACACAGTCATTTAGCATTTAaccatctagtgcactacaacAAAATAGTGTAAAGCCAATATGTCAAGCCACTTagagtgcactatatagggagCAGGGGGCCATTTTGGATACAGCCATGTAGTGCACTGTAAATGGTGTTAAAGACATATATGTAGCGCCCTGTAGCTGGAGCAGGGGGACATTTAGGATTCACAAATGCAGTGCGCTATAAAGGGTGTAAAAGGAGGATATTACACAGTagctgtagtgcactatatagggagGAGGGAGACATTTTTGGACACAGCCATATAGTGcagtataaacagtgtaaaatgcattatttatggATTAATCCTCTGGGGGTAAAATGAAAGCATTAACTGTTGCtcttaaaaaacaaatccagacaaaaaaatatatacatttgcaaaaatatgtgaaaaaaattttttttttttcctgcaggtcATCAAAACACAGTCTATAAACATGAACCGCACAAATCCTGttcaaaaacaacataaaatctCACATGCTGCCGAAATAAAAGCTAATTCCGCCTTAAAGTGCTTCACACAATCCCGAAAAATGtccagaataataataaaataataataattattatttttattaggaaAAAAGACCTGAAACGCCGCctaaagagaaacaaagacaaCCTGCAGGCCCAAAACTGCACGCGCAAAAAAGCTGCACAGAGGATAAACAggtcaagaagaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85789 lncRNA upstream 44290 28574922 ~ 28578950 (+) True G72378
TU85742 lncRNA upstream 151475 28468948 ~ 28471765 (+) True G72336
TU85711 lncRNA upstream 239832 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA upstream 295059 28316404 ~ 28328181 (+) False htr5ab
TU85674 lncRNA upstream 501098 28114451 ~ 28122142 (+) True G72276
TU85843 lncRNA downstream 23441 28651414 ~ 28651621 (+) True G72422
TU85849 lncRNA downstream 30303 28658276 ~ 28658536 (+) True G72428
TU85891 lncRNA downstream 130582 28758555 ~ 28761451 (+) False gng5
TU85895 lncRNA downstream 159644 28787617 ~ 28791836 (+) True G72472
TU86346 lncRNA downstream 164874 28792847 ~ 28797137 (+) False selenot1a
XM_034303288.1 mRNA upstream 12083 28602905 ~ 28611157 (+) False LOC113540233
XM_034303287.1 mRNA upstream 12083 28605823 ~ 28611157 (+) True LOC113540233
XM_026936573.2 mRNA upstream 12083 28605823 ~ 28611157 (+) False LOC113540233
XM_026936568.2 mRNA upstream 34621 28558278 ~ 28588619 (+) True rnf32
XM_026936935.2 mRNA downstream 26783 28654756 ~ 28666631 (+) True slc1a7a
XM_026936875.2 mRNA downstream 63123 28691096 ~ 28699416 (+) True aldh9a1b
XM_026936340.2 mRNA downstream 88291 28716264 ~ 28722857 (+) True fzr1b
XM_026937211.2 mRNA downstream 111153 28739126 ~ 28745646 (+) False si:ch73-344o19.1
XM_026937212.2 mRNA downstream 111154 28739127 ~ 28745646 (+) True si:ch73-344o19.1
trnat-ugu_8 other upstream 1001857 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1002563 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1065338 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1066592 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1133915 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 246383 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 992020 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2118158 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2118158 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2433757 31061730 ~ 31097888 (+) False spsb4a

Expression Profile