RNA id: TU85958


Basic Information

Item Value
RNA id TU85958
length 3081
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G72517
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27569244 ~ 27970795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATCGTCACTCACATTCGAGATACACACCTCAACTACACACGCTGAACTTCAAAgaataatggggaaaaaaatgacaaactacaACGGCACCAAGTCTCCAAAGCATTTTATTTGATCATGTAAGAAATTAACACAAAGCAACaacatcttgatttttttttaatggcacaCAAGGTGAATTTTTTACAGGTTTGTCAAAGAAAGCAAAAGACAAGTGGAATGTGGCTTAGCTGGTTTTACTTTACTTAAATTACTGTTAAATTATATTAACTGAACATTTCAGCAAATCTTAACAtcaaacaacaagaaaaaagagcaaagtcCTAGCATGAAGATGACAATTCGTTTTTAACGTACATGCTTCGTTTGCATAGCTTTAAGgattgaaaagaaagaaagatcatTGCTTGTATGTAGGCATGTGCCGACAGACGCGCAGCTTTCAACCACCGGAATCAACATCGCGATACTGCATCGAAAAAAAAGTCGTAGTCACAGCGCTGTCCACTACGTTCAATAAAATTTTAGAATTAAATCCTTAAAAGAACGCTGTGTTTATGCTAGGATGTTGTCCTGGTCTACCGAGGCAGCCTCCTTTCAAATGCTCAGAAGTGTGTACGGTGATAATATTGCGAGTGCTGAATATCGTGAAAACTGATCATCGGAAAACATGCCTACTTGTGTGCTAGCTACTCTGCGTTAGCTACTCTGCGTTAACGTGGAACAGATGATAGCTAATTAACCTTAACCGAGCCTCGAGCCGACGTCAAATGAGAACATCGTCGCTGCGACTCATGCGTCCTCACTTTCATTCTTAAGGCGGCTTGAATCACAAAACGGAAACGTAGCAAATAACGTAAAACTGTAGCTGATCGCAGGGAGACTACGATAAACAATAAATCTGGGTGAACCAATCATCTCTTAAGGCTTTAAAATGCGTTCTGCGTGACCGGAGAAAGCCTCGCTTGCTATGGCTGTATCGCTAAACAGAGCCGCTAATAACGTTAGCATTAAATTAGCACATCCTGAATTGTGCCAAAGACTGAAATAACATCTTGGACTATTagtaaattttattatatataatgttaacaACTCTGTTTGCTCATAACAGCTGATGAAACTAATTTTGTCTAACTAGCAAAATGATTTTTACGCTAGGCAGTTAGCATGCCAGCCAGATATGCTAACAAAGggttagctagctggttagcaaGCCAATATAATGTGGCTGTCGAGTGTGAAGGACAACAGGAACAATAAGTTGGAGATCCTTGgagatttacacacaatttCCTTCACATTGCttaaatgttgtgtgtttttttttgctaattagcatgttagcaaAACTTTAACAAGCCAACCAGACAGCATGCTAGCTAGGCCAATATGACTGTAGCAGAAATTGAGTGTCATTCTCCAAGGAAAGTGCTTCAGCGTTgagtttgttcctgttttgcTAATTAGCATGCTAAGTAGTTAGCAAGGCAGTcaattagcatgctagctggTCAGCTAGTTACGCAGAAGTAGGTATGACTGTGAAAACTGATGGAATTTGTTTCAACGTAGAGTGTGTTCCTTGCTAATCGCTCCACACTTCGTAGCTGTGAAAGGAATAACAAGTGCTGATGGTGTTTCGTTGCTAGCTGGTTAGCATGCTACGTAGAAGTTGGTATGGTGATGAAAACTGAAAGAAATTCTCCACGGAAGTCACTTCAATGTTAAGCGTTTTCCTGCTAATTGCTAATGAAAAGGGCACATTATAAAGACTGAAACACAGGGATTCGCTCAACTTGCGTAGGTTcagcacacacagtgctgtCCTGCTTTTCAACAGCTAGCATAGATGCTAAAACATACACGAAATACATGtgttccttcatttttttttcccccttctagGTCAGGGCTAAACATGCTAGCTCTTCCTTTTAGCGAAGGGATAGAAGTACTCGAACCAGCGAGTCACACGTACGTCAAACATCTCCATCGGGACGCCTGCACAGAGAATCGAGGATAAGGCAAAAATGGCAGACGCAGttcaggaagttttttttttttttccttttttttttttttaaaataaaaaaattgttatttattttcaatagtttatattatacataagCACAATTCGGTGTACGTACTCCCGGTGctggcactggacccactccATTTTTCATCCTGGATCGGCCACGCCCACCTCGACCTGTAAGCCACGCCCCTCTGGGTCTCCTCCTCCCAGGGAAGCCTGATCCCCGGCCCTGTAACGCAGATATACAGAGTTAATGAGCTTACCGATGGAGTTATAGTTTAACACCGCACAAAATGATATGATACTGGAGGTGTGAGGTTAATGTGGCTAACAAGTAATAGAAGCTTacagcctccagtttagcatcatgtgCTAAATCTGTATGTTAGTTCTTAGAAGTGTTAAAACGTCAGACCCCAAACATGTCCCACCTCATCGACTACATTCTGGACAGTCCAGACTGTCCCTTTAACTCTGACAGCATATGACCCCGTACCACGTTCTTTAGTCgccttgggggaaaaaaaaaccccagaagcCGCTTCGTATGCATAACACTGCGATCTACGAGTTCGTTCAGCAGCAGCGATGTTTTATCAGCGAGTGTGTTATCGCTCAAGTGCAGAGTAAAGAGATTACAGGTGAGGATGGATCACATGACGACCTGAACTCAGCCGCACCGGGATGATGTGGTGAGATGGTGCGATAACTAAATTGTTAAGTGTGATCAAATGATAACACAGAAATCTTTATCTTCACGTCTTCTCATTTTTCATGTGAGAATGACACACGTGTGTCaatctatctctctctgcctgtcagtctatacctgtctgtctgcgtgtcagtctatacctgtctgtctgcgtgtcagtctatacctgtctgtctgcctgtcagtctatacctgtctgtctgcgtgtCAGTCTATACCTGTCTGTCAGCCTGTCAgtctatacctgtctgtctgcgtgtCAGTCTATACCTGTCTGTCAGCCTGTCAGTCTATacctctctgtctgcctgtcagtctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85461 lncRNA downstream 416847 27474765 ~ 27477666 (-) True tsen15
TU85454 lncRNA downstream 449399 27444743 ~ 27445114 (-) True G72094
TU85433 lncRNA downstream 487694 27403137 ~ 27406819 (-) True G72074
TU85431 lncRNA downstream 491878 27401670 ~ 27402635 (-) True G72073
TU85300 lncRNA downstream 607815 27286239 ~ 27286698 (-) True G71955
TU86051 lncRNA upstream 3675 27974470 ~ 27980336 (-) True LOC117597146
XR_004578040.1 lncRNA upstream 6283 27977078 ~ 27985856 (-) False LOC117597146
TU86047 lncRNA upstream 40889 28011684 ~ 28012804 (-) True G72604
TU86109 lncRNA upstream 96787 28067582 ~ 28068084 (-) True G72652
TU86108 lncRNA upstream 97697 28068492 ~ 28069277 (-) True G72651
XM_026936536.2 mRNA downstream 55416 27704281 ~ 27839097 (-) False dpp6b
XM_026936534.2 mRNA downstream 80245 27704281 ~ 27814268 (-) True dpp6b
XM_026936537.2 mRNA downstream 102842 27704281 ~ 27791671 (-) False dpp6b
XM_026936535.2 mRNA downstream 118643 27704281 ~ 27775870 (-) False dpp6b
XM_026936538.2 mRNA downstream 118706 27704281 ~ 27775807 (-) False dpp6b
XM_026937119.2 mRNA upstream 45269 28016064 ~ 28041785 (-) False prkag2b
XM_026937117.2 mRNA upstream 45269 28016064 ~ 28041785 (-) False prkag2b
XM_034304035.1 mRNA upstream 45269 28016064 ~ 28029051 (-) True prkag2b
XM_026935893.2 mRNA upstream 85917 28056712 ~ 28064529 (-) True cpdp
XM_026936704.2 mRNA upstream 104821 28075616 ~ 28093936 (-) True tsc22d2
trnat-ugu_9 other downstream 269705 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 273385 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 338527 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 461835 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 498290 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404039.2 other upstream 45269 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 265391 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 265929 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 677529 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 902783 28873578 ~ 28882164 (-) True LOC117597037

Expression Profile