RNA id: TU86108


Basic Information

Item Value
RNA id TU86108
length 681
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G72651
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28068492 ~ 28069277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATCACAAGAAcgtgtttattttttgaaatattatttagaaaaaaaaaaaagtttaaaacacCCAGCTGTTCAACAAAAAACTCAATACGCACTAACCAATCTCCTGGCAGGTcgtaaaacatttttaaaaaaatttgcttAACGTAAAAAGATCAGCTTAATATTAGACAAATAAGCAAAACACAGGAACTCCggctttggaaaaaaaaaggaactgtcACTGAAAAATTGGCAAATGCGGAACTTATGGAAATTATGGAAAGAATTCCTGTCAAATCCGTATCCCGACCTTGGGGAAAAAGAAGTCTCTTCGGAGCAGGAAAGTCTGTTCAAAGAGCATCAGAGCAGCTGAGGAGAAAAGCCGTCCGTCAGCGTGCTGCCGCAAAGGTGCCAAGGGAGTCATGTGACCTCGGCGGGCTTGTGTGATTGGCTCTCCGTGTCAGGTGCTAGCCCACGGTGACAAAGCGTCCGCCTCTGGCGTTCTGCTGCGTTGCCGCCATGCGCTTCATCTTCAGGATGCGGAAGCGCTCGTTAAGCGTCATGGCCGTCTGCTGTTTTCCCACGCTGTTGATGTCGAACTGCAGCGCCACCCCTTTGGGCTTTTTCCTCTCAGGCTCTGGTGCTGTGTTCTGAGGAGGTGGAGTCACCATGGGTGGGTGGAGCGACCACGAGTGGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86109 lncRNA downstream 408 28067582 ~ 28068084 (-) True G72652
TU86047 lncRNA downstream 55688 28011684 ~ 28012804 (-) True G72604
XR_004578040.1 lncRNA downstream 82636 27977078 ~ 27985856 (-) False LOC117597146
TU86051 lncRNA downstream 88156 27974470 ~ 27980336 (-) True LOC117597146
TU85958 lncRNA downstream 97697 27894513 ~ 27970795 (-) False G72517
TU86122 lncRNA upstream 12267 28081544 ~ 28111472 (-) False G72658
TU86124 lncRNA upstream 12267 28081544 ~ 28111472 (-) False G72658
TU86126 lncRNA upstream 12267 28081544 ~ 28111472 (-) False G72658
TU86123 lncRNA upstream 35222 28104499 ~ 28111472 (-) True G72658
TU86119 lncRNA upstream 35269 28104546 ~ 28111472 (-) False G72658
XM_026935893.2 mRNA downstream 3963 28056712 ~ 28064529 (-) True cpdp
XM_026937119.2 mRNA downstream 26707 28016064 ~ 28041785 (-) False prkag2b
XM_026937117.2 mRNA downstream 26707 28016064 ~ 28041785 (-) False prkag2b
XM_034304035.1 mRNA downstream 39441 28016064 ~ 28029051 (-) True prkag2b
XM_026936538.2 mRNA downstream 292685 27704281 ~ 27775807 (-) False dpp6b
XM_026936704.2 mRNA upstream 6339 28075616 ~ 28093936 (-) True tsc22d2
XM_026936705.2 mRNA upstream 18134 28087411 ~ 28093937 (-) False tsc22d2
XM_026936392.2 mRNA upstream 47815 28117092 ~ 28122103 (-) True ahsg2
XM_034303980.1 mRNA upstream 54805 28124082 ~ 28140907 (-) False LOC113540134
XM_026936390.2 mRNA upstream 54805 28124082 ~ 28138768 (-) True LOC113540134
XR_003404039.2 other downstream 26707 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 443684 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 447364 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 512506 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 635814 27428420 ~ 27432678 (-) False LOC113540508
trnas-uga_1 other upstream 166909 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 167447 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 579047 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 804301 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 804303 28873580 ~ 28884965 (-) False LOC117597037

Expression Profile