RNA id: XM_034303991.1


Basic Information

Item Value
RNA id XM_034303991.1
length 1026
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC117597168
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28787614 ~ 28791829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGTTTGTGAGTACGTAGCCATAAAGCGAGACAACTTTGTTTCCTCGTTACCTCGAAAGCCTGTCGCTGGTCCTGTGCGTGGTTTCACATCAGCGGAGTTTTAAAACGCAGCTACGCCAAGATGGTGGCAAAGCAGAGAATCCGCATGGCCAACGAGAAGCACAGCAAAAACATCACGCAGCGAGGCAACGTCAAATCAACGAAAAATAACACGGATGACAAAGTCTCAGTGGGACCATGGCTCCTGGCGCTCTTTATCTTTGTCGTGTGTGGGTCAGCCATATTCCAGATCATCCAGAGCATCCGAATGGGAATGTAACAGCAAGCACGGATGCACCGCACAGCGACCACTCGCCATTCCTACCTTCTACTTCCTGCTCCTTCGCAATAAAGGAATTTCTCTCAGCACCTTCGGTTTAATTTAAGCGATTTCTTCTGCCAGAGGTGCATCGGCATGCGATTCCTCTTCCTGTGCCTTATTACCACGAGGAAATTTCATCGAGCAATTAACTGCCGTCCGCTACGCTTCGTTCTTTCAATGCAAGCTATGATGTGACTCGTCTTAATTTCTTACATTCCTCCGGAGTATGTGGTAATTTTTATCTCTAAATGAAGGCGCTTGATGTATCCTgatatctttattttaatacCTAATTGACCAAATAGTGGGAAATTTGCACAAGGTGAAGGAGATAAAAGCCGGGAACCAATGGAAGCATGGAAACCAATCAAAAGATGGAAAGCTAAACCCTCTTCTTTTGACCACTAATgtaattttctttcattcctttatGATTTTGTGATTCTAACAGTATTTCCGATGGCTgcctctgtgtgtttcagttctGATTAGCGCCAGAGTTTAGGGCTACGTATGGGCTTCGTCTCATTTACAGTTCTCAGGCACATACTGCTCTTTGGCATACCccatagtgacctagaaattgtgcTTATTGTCTCAGACTTAATGGAAGCTTTGAATAGATCATGGGgtgaaactgaaataaaatgtcattgaGAGCATG

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86345 lncRNA downstream 3474 28782923 ~ 28784140 (-) True G72824
XR_004577998.1 lncRNA downstream 69659 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 118971 28667323 ~ 28668643 (-) True G72796
TU86223 lncRNA downstream 315843 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 404154 28343134 ~ 28383460 (-) True G72709
TU86430 lncRNA upstream 40555 28832384 ~ 28833720 (-) True G72893
XR_004577988.1 lncRNA upstream 100187 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 100187 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA upstream 100187 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA upstream 100187 28892016 ~ 28896799 (-) True LOC117597038
XM_026936500.2 mRNA downstream 1859 28763304 ~ 28785755 (-) False ppm1la
XM_034303990.1 mRNA downstream 1859 28763304 ~ 28785755 (-) False ppm1la
XM_026936499.2 mRNA downstream 13854 28763304 ~ 28773760 (-) True ppm1la
XM_026936502.2 mRNA downstream 17378 28763304 ~ 28770236 (-) False ppm1la
XM_026936501.2 mRNA downstream 17378 28763304 ~ 28770236 (-) False ppm1la
XM_026936493.2 mRNA upstream 7148 28798977 ~ 28827964 (-) False LOC113540190
XM_026936494.2 mRNA upstream 7148 28798977 ~ 28812304 (-) False LOC113540190
XM_026936495.2 mRNA upstream 7148 28798977 ~ 28812304 (-) False LOC113540190
XM_026936497.2 mRNA upstream 7148 28798977 ~ 28812304 (-) False LOC113540190
XM_034304055.1 mRNA upstream 7148 28798977 ~ 28810666 (-) True LOC113540190
XR_004578096.1 other downstream 135189 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 550809 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 551347 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 745829 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1162806 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 81749 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 81751 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 90498 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 356809 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 731565 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile