RNA id: TU86345


Basic Information

Item Value
RNA id TU86345
length 1218
lncRNA type intronic
GC content 0.42
exon number 1
gene id G72824
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28782923 ~ 28784140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGGCTCAAGTTCGATTAAAAGGATTCGCCCATTCAACTGCAAATATCCAGGAAAAGTTGGTTAGCAAATTTGTAACAAGATGGCCTTCAAGTATCAAACACAAAATCATCATAATTCTTGCTTCTCTGTTTTATGAAAATTTGCCtttaataataactaaagtGAAATAGTGTTTATTTACCACCAAAAAGTATACTTGATCCCAAGCAATTACCTTTGACAAGTTTCTCAAGCACACCCCAAATTTTGGCATgaaacacagactcacacatTATTTCAGAAAACAATTAAATGACATGCTTATCATCTAAttaattccttcattcatcttcagttccTACTTTATTCCAATCAGGGTCAGGGTGGCTCCAGGGGGAAGAAATCaagcaatgtttaaaaaaacttagTAAAGCTTTTGCGTTTCAATTTGACCCACTTTACACATGGCACTACTAAAAAGTAATGCACACATTGCATTCCACATTTTTCCCCACCAtaatgattgcatttcagtATGGCATGAATTCCATTCCATATGCTACATATCCcctataaaatgaaaattctgtttaGTACACAAATTAGTCAGTGTCTGGAAAACCATCCCTGAAGGTGCACTCTGATATGAATTTCAGAAGATATGGCCCAAAGCAGAGTTATTAGTAGCTGGTCAGTTGCTGTTAGTAAGCGTATGAGGCATCAGTATGAGGCTTGGGTAAAATAAGTGGCTTCTGATGCAACAGGCACTGGTCATGTGTAGTAAAGCAAAAGGTCCATTCTCAGGTGTTCTCAGTCGTCATTCCTTAGTGGCATCAGCGAAGAGTAGGAAGCCAGAAAAGGTACTGTCGTCTTCACTGCTGGAATAAATTCCATTCCAGTCCCGCAGTGTCTCCAGCCATACCTGGTCACCAGAGGACAGTCGGATCAGTGCCATGTTGGAGGCCTGGTCGATGTCCTGGCCATAGAGGGAGTCGCGAGTGCGCAGTTTCCGAACCCCATTCACTACCAAGGCGGCCCGCAAAGGACGACTGCGAACGGTGATGTAGTAGGAAAACACATAGACACCTCCGTAAGTGCAGTTGAACTTGCTGATATAGGGGTCCCAGTGTCCTTCCTCGTTGTAGATGACTTTGTCAAATTTGACCGGGTGGCCAGGAGGAGGGAAAGATCTGCTAGGGAAGAGTCCTACGCTAAAGGCTGAGCGCTTCTGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577998.1 lncRNA downstream 64968 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 114280 28667323 ~ 28668643 (-) True G72796
TU86223 lncRNA downstream 311152 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 399463 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA downstream 403791 28365657 ~ 28379132 (-) True G72720
TU86322 lncRNA upstream 3483 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 48244 28832384 ~ 28833720 (-) True G72893
XR_004577988.1 lncRNA upstream 107876 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 107876 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA upstream 107876 28892016 ~ 28896799 (-) False LOC117597038
XM_026936499.2 mRNA downstream 9163 28763304 ~ 28773760 (-) True ppm1la
XM_026936502.2 mRNA downstream 12687 28763304 ~ 28770236 (-) False ppm1la
XM_026936501.2 mRNA downstream 12687 28763304 ~ 28770236 (-) False ppm1la
XM_026936110.2 mRNA downstream 19646 28762094 ~ 28763277 (-) True arl14
XM_034303988.1 mRNA downstream 26279 28745630 ~ 28756644 (-) True LOC113540626
XM_034303991.1 mRNA upstream 3474 28787614 ~ 28791829 (-) True LOC117597168
XM_026936493.2 mRNA upstream 14837 28798977 ~ 28827964 (-) False LOC113540190
XM_026936494.2 mRNA upstream 14837 28798977 ~ 28812304 (-) False LOC113540190
XM_026936495.2 mRNA upstream 14837 28798977 ~ 28812304 (-) False LOC113540190
XM_026936497.2 mRNA upstream 14837 28798977 ~ 28812304 (-) False LOC113540190
XR_004578096.1 other downstream 130498 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 546118 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 546656 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 741138 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1158115 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 89438 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 89440 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 98187 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 364498 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 739254 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile