RNA id: TU86406


Basic Information

Item Value
RNA id TU86406
length 1224
RNA type TUCP
GC content 0.39
exon number 2
gene id G72873
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28874356 ~ 28912104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaaaatacttttttcaatttaaagatttttttaaaagaattgacaaatgattaacaaataaaagaaatactaTAATAACTTTTAAGAAAGCTGTCTAAGCTTCCCGGATGCCATTTTGAGAAGCACGGCCTTAaaccatatttattttttgtatctttGGCACAAAATGCACTTTTTCACTACATAACTGTTAGGCTAAGGCTCAATATTAACATctacattttttgcattttgggAGAATAAAAATGCACCTGTACAGTCCACGTTTCtgattttttataaatgtgacCTTGGTTCAAGGCTGTCTGCTTTAGCAAGTGAGACCACATTAGGTGTATGGAAATTCACAAATACAATTTATGAAGTTTGATGGCTCACtaagaataaagaaataaaacattagctATGAGACGGGAAGTTAAATGGATATTCCTATACAGCCACTTGTGGTTAAATGTGTTTGAGATTCCTCTGTAAGCATATTCcgtattttacaaaaataccTACAGTGTTGCATTCAGATTTTTCCAAATAAACCATGTTAGAAAGCAGCctttaaaaaatctgaatcaGGCTCCTAACTGCACTTCAATATTTTGACCTGTCCATGATAATAATATTGTGCTGAATATTGCGGTATATCGTATAATCATGATATTCGATTATCGGTACACGCCTTACTCCAACATTACCCATTCAAATAAGAAGGAAAACAATGCAGGCTGCGAGTAAAGGAGTCAAATCTGACGTTTACTTTCAGAGATGAAGATTCCACTTGCACGTTTATGACCTTATTTGGGCAtgcaacatattttttaaaaaagcacaaacactGACTAACTagataaaaaatagaaattgcACATTGTTTATGGGGCGTAGCGGCGATTTGTCCGAGTGTTGGATCGGGAGAGATGGCGAGCGTCAGTGTGGTGCGCCGTTTAACGCCGCCGCAGTCCTGCTGCGTTCCCTTCATCAAGCGGGTAAATGGCGTTTCAGCACGTCCTTGGCGTTGGACGGCAGACTGTCGGAAAGTTCACGTCAAACTCCACTATGAGATCTCCTCTTTGCTCAGGGTTCTTGGGGAAGGGCAGCCCCTGTCCCGCTACGATCTTCCTCATTCCCGGTTTGATGACCTCCGTGATCTTCATATTGCACGTTTTCCCGTCTATCGTGGAGACCGTAACCGAGCAACCGCACAATGACTGCAATCAcagaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86402 lncRNA upstream 368 28873603 ~ 28873988 (+) True G72872
TU86346 lncRNA upstream 77219 28792847 ~ 28797137 (+) False selenot1a
TU85895 lncRNA upstream 82520 28787617 ~ 28791836 (+) True G72472
TU85891 lncRNA upstream 112905 28758555 ~ 28761451 (+) False gng5
TU85849 lncRNA upstream 215820 28658276 ~ 28658536 (+) True G72428
TU86425 lncRNA downstream 2525 28914629 ~ 28915189 (+) True G72889
TU86423 lncRNA downstream 2679 28914783 ~ 28915258 (+) False G72889
TU86429 lncRNA downstream 5638 28917742 ~ 28918398 (+) True G72892
TU86452 lncRNA downstream 18972 28931076 ~ 28931398 (+) True G72910
TU86455 lncRNA downstream 21879 28933983 ~ 28934309 (+) True G72913
XM_034303521.1 mRNA upstream 6178 28863057 ~ 28868178 (+) True LOC117597034
XM_026936512.2 mRNA upstream 31594 28832373 ~ 28842762 (+) True txndc12
XM_026936513.2 mRNA upstream 42628 28827952 ~ 28831728 (+) True LOC113540201
XM_034304057.1 mRNA upstream 50854 28814083 ~ 28823502 (+) True zgc:153615
XM_026936510.2 mRNA upstream 50854 28814083 ~ 28823502 (+) False zgc:153615
XM_026936508.2 mRNA downstream 11507 28923611 ~ 28930532 (+) True cope
XM_034303336.1 mRNA downstream 28570 28940674 ~ 29042995 (+) False st6galnac5a
XM_034303341.1 mRNA downstream 28570 28940674 ~ 29042995 (+) False st6galnac5a
XM_034303338.1 mRNA downstream 28570 28940674 ~ 29042995 (+) False st6galnac5a
XM_034303339.1 mRNA downstream 28570 28940674 ~ 29042995 (+) False st6galnac5a
trnat-ugu_8 other upstream 1252973 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1253679 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1316454 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1317708 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1385031 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86682 other downstream 707889 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1834027 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1834027 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2149626 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 2439157 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile