RNA id: TU86528


Basic Information

Item Value
RNA id TU86528
length 365
lncRNA type read_through
GC content 0.38
exon number 2
gene id fubp1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29181767 ~ 29196149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttatttattttttttatatatatatatatttttttgcatagCACACTTGCTTGCTCTAGGCAGTTCATTGGAGAGTGTTTTGTTGTCCGTTGCTGCATATGTTGTGGTATGCATGCAGTATGCTATGTCCTTCTGAGCAAACTGTCCACAACAGAATTCATTGCGGGTGTAGAAAAGAAGACATAATCGGAGGCTATCTGAGAAATGGGGAGCGTGGCCGGGAGGTAAACACAAACGGTTTCATGTCATGTACTGTTGAAACTATGGAATGTATATCCTTTTGCATTTAGggctttgttgttttcttttgtatttttttgcagACAATTGTTGGTTTTGACTGTTTAGCATTGTTGACCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86462 lncRNA upstream 127549 29053486 ~ 29054218 (+) True G72917
TU86455 lncRNA upstream 247458 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 250369 28931076 ~ 28931398 (+) True G72910
TU86429 lncRNA upstream 263369 28917742 ~ 28918398 (+) True G72892
TU86423 lncRNA upstream 266509 28914783 ~ 28915258 (+) False G72889
TU86551 lncRNA downstream 103017 29299135 ~ 29301133 (+) True G73000
TU86633 lncRNA downstream 287144 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA downstream 322990 29519108 ~ 29521022 (+) True G73069
TU86649 lncRNA downstream 328180 29524298 ~ 29524836 (+) True G73088
TU86650 lncRNA downstream 330084 29526202 ~ 29526918 (+) True G73089
XM_026936490.2 mRNA upstream 53203 29080184 ~ 29128564 (+) True ak5
XM_034303337.1 mRNA upstream 138772 28945159 ~ 29042995 (+) False st6galnac5a
XM_026936514.2 mRNA downstream 471 29196589 ~ 29205743 (+) True LOC113540202
XM_026936710.2 mRNA downstream 12216 29208334 ~ 29218020 (+) False LOC113540294
XM_026936711.2 mRNA downstream 15847 29211965 ~ 29218020 (+) True LOC113540294
XM_026935926.2 mRNA downstream 23408 29219526 ~ 29225911 (+) True LOC113539851
XM_034303400.1 mRNA downstream 24696 29220814 ~ 29225911 (+) False LOC113539851
TU86406 other upstream 269663 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1560384 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1561090 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1623865 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1625119 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 423875 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1550013 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1550013 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1865612 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 2155143 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile