RNA id: TU86630


Basic Information

Item Value
RNA id TU86630
length 887
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G73069
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29519108 ~ 29521022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTATTGTCAAATGAGCCAAACACTACATGAAACATTTAAATCCTTTAAATGTTAAGACCCACTTTTGAAGAGGACTTCACACAAAGAAGTACTTGATAAAACAATATACAATTAAATTAAtacaatccaaaaaaaaaaaaaagtgcctttgCGTTTACTGACAGGGAAGGAGTGAGTGAACCAAGTTAAACTGCACACGTATGTTAGCATAACATAATTGGCAGACTTGATGCAGCACTTGTATCTTTTAGTCCACAAGTAAATTACTAAACGATGAAGAACATCTAACACGGATATTTTGAACATACTAGGGAGAAAATACCTGATAAAGAACACATTTAAAGAACCCATTTTTCTGCAAACGCCGCTACCGGGAGACACCGATACGACGCCCACAGCCGTCCGCGCAGGAAAGTCACGTCACGTATCGTATCGAATTCGCACGTCTGATCCACAGCCAGCATTGAGGAGAAACaggctttttttattcttccaaTAAAATAAGCGCAAAAAATGCAAGTGATTATTCTGTAGCTATCcctgcattaaaaataaatctccgGCGGTTTAAATCAGATCGGCCACGTTCATCGGCATCTCCTCCACGGTCGTGTTGTAAAACGTCTCAATGTCTCGAAGGATCCGTTTGTCCTCTTCAGTAACGAAGTTAATGGCGACGCCTTTTCTGCCAAAACGACCTCCACGGCCAATTCTATGGATGTAGTTCTCTCGGTTCGTCGGAAGGTCGTAGTTGATAACAAGGGAAACTTGTTGCACATCGATACCACGAGCCTGaagggagagaagagaaaaaaaacacgtaCAGCCCGTTAATCTACACGCGTCCCGGCGAAGTAACTCACGTATCAAACACGTTTCTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86551 lncRNA upstream 217975 29299135 ~ 29301133 (+) True G73000
TU86528 lncRNA upstream 322990 29181767 ~ 29196118 (+) False fubp1
TU86462 lncRNA upstream 464890 29053486 ~ 29054218 (+) True G72917
TU86455 lncRNA upstream 584799 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 587710 28931076 ~ 28931398 (+) True G72910
TU86649 lncRNA downstream 3276 29524298 ~ 29524836 (+) True G73088
TU86650 lncRNA downstream 5180 29526202 ~ 29526918 (+) True G73089
TU86653 lncRNA downstream 20073 29541095 ~ 29541435 (+) True G73092
TU86683 lncRNA downstream 108571 29629593 ~ 29629823 (+) True G73118
TU86686 lncRNA downstream 152492 29673514 ~ 29681141 (+) False zgc:153115
XM_034303405.1 mRNA upstream 5329 29500475 ~ 29513779 (+) True b3gnt5b
XM_026936995.2 mRNA upstream 5329 29500475 ~ 29513779 (+) False b3gnt5b
XM_026936996.2 mRNA upstream 5329 29500475 ~ 29513779 (+) False b3gnt5b
XM_026937112.2 mRNA upstream 22523 29481242 ~ 29496585 (+) True tbl1xr1b
XM_034303854.1 mRNA upstream 59813 29455551 ~ 29459295 (+) True LOC113540045
XM_034303967.1 mRNA downstream 13612 29534634 ~ 29540015 (+) True dcun1d1
XM_034303969.1 mRNA downstream 13732 29534754 ~ 29539598 (+) False dcun1d1
XM_034303968.1 mRNA downstream 13733 29534755 ~ 29539598 (+) False dcun1d1
XM_026936004.2 mRNA downstream 20961 29541983 ~ 29553547 (+) True ccdc39
XM_034303451.1 mRNA downstream 32993 29554015 ~ 29559125 (+) True LOC113540073
TU86406 other upstream 607004 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1897725 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1898431 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1961206 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1962460 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 98971 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1225109 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1225109 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1540708 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1830239 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile