RNA id: XM_034304047.1


Basic Information

Item Value
RNA id XM_034304047.1
length 1463
RNA type mRNA
GC content 0.42
exon number 3
gene id asip2b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29619993 ~ 29623797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttAGACAGCGCAGGACAATCACTTATTTTACACCCATTCAGAGCTTGTTTCTTCATCTGACATTGCAAGGCTGTTTTTCATGAGGATGGCTGGCAGATACTTTCTctgcatctcttttttctttgcacTGATTCAGTCTACTGTGGCTTCTGGAGATTTGCGCAAAAACCATTTCAGCCCCGTTGCGCACCACAATTCCACCCCTGAAACTCCAGGAACCATGAGCGAGGAAAAGCCGATAGGAATCTTTAGTAGGAGACGCTCTCTGTCCCCACAGAGACAGCACGTGCCGAAGCCCAGACCTGAGACAGGCAGTGCCAGTCCTGGCTCGGTGCGGCAGTGTGCCCGTCTGATGGAGACATGCTCGGCACACTCTCCATGCTGCAATCCCTGCGCTATCTGCCATTGCCGACTCTTCAACACAATCTGCCAGTGCTGGAGGATCGGCGTGTGCTCAAGAAAGAACTAAATACCAAGTACTTATTTGTGAAGCGTAATGAATGCTCTCACACCATTACCACATCATAAATGCATTCTGCACGCTCATCAGTCCAGACTGTTGTCGAGCAGACACAATGACTCGCACTCACACAAACTTTGTGGGAAAATTTCACCTGGGGAACAAAAACCAGAAAGTTTTTGTTGGGTGTCATATGAATGAACTTGTACATTAACCATTCACGACAAGTGGGCAGtcttggacacacacacacacacacactgaaaaagaaataataaagcatcctttttattttcccaaaatgcAAATGGTATATGTAATAGTATAAAAGTTATATGTGTAGTATCCTGGTCACATATTTGTAGGTGAACTCTGAGGTTCATCTGCAATGCTTTAAGGTATGAGAcataaaatatgataatatCATGATAATAACACAAATCTTTTATCATGGTTTATAGTATTCTGCATGTGTACTTCATGCTATGTGTACCTTTACCTGTTGTAACTGGGCAgctttttaaccaaaaaaatgtTCCTCGGCATGTGACGTCCTCATGATAGCAGctcacttgcttctgttttcaGTATCAAAGGTGCAGCCAAGgcgtaaaaaaaatcacttttaagAAGCTGGCGCTCTATCTAAAAAGAATGTTAAGAAGGTTTTATGAAGGCTTCTCTTCAGTGATCGGTAACACATAAGCAAGACGACTGAAATAGGCTTTACCAGCACATCTTGGTTTATTGACGTAGGCAGTACAACACTTGTGATGGATTAAAAGTGCCTGGAAAGTATTAGCTAAACAGATATTTTCTGGCATTATGCACTAGCTAGAATGGTGGCTTTGTATTCATGGCACGGGTTCTAATCTCTTGTCCTGAGGACCCCTTGTCCTGCACAGTTTTAAGTTTTCCCATCAGAACTTAGCAGCTAATCAAAACCTTGCTGATGAAACACCTATTCCAGgacacatacagtggatataaaaagtctacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86653 lncRNA upstream 78676 29541095 ~ 29541435 (+) True G73092
TU86650 lncRNA upstream 93193 29526202 ~ 29526918 (+) True G73089
TU86649 lncRNA upstream 95275 29524298 ~ 29524836 (+) True G73088
TU86633 lncRNA upstream 95869 29483262 ~ 29524242 (+) True G73072
TU86683 lncRNA downstream 5796 29629593 ~ 29629823 (+) True G73118
TU86686 lncRNA downstream 49717 29673514 ~ 29681141 (+) False zgc:153115
TU86717 lncRNA downstream 88673 29712470 ~ 29712682 (+) True G73151
TU86720 lncRNA downstream 94665 29718462 ~ 29719317 (+) True G73154
TU86688 lncRNA downstream 98269 29722066 ~ 29723750 (+) True G73123
XM_034303440.1 mRNA upstream 17281 29596466 ~ 29602830 (+) True LOC113540482
XM_034303438.1 mRNA upstream 17281 29596466 ~ 29602830 (+) False LOC113540482
XM_034303441.1 mRNA upstream 17281 29596466 ~ 29602830 (+) False LOC113540482
XM_034303439.1 mRNA upstream 17281 29596466 ~ 29602830 (+) False LOC113540482
XM_034303451.1 mRNA upstream 60986 29554015 ~ 29559125 (+) True LOC113540073
XM_026935837.2 mRNA downstream 49908 29673705 ~ 29681175 (+) True zgc:153115
XM_034303651.1 mRNA downstream 80691 29704488 ~ 29720768 (+) True rc3h1b
XM_026935987.2 mRNA downstream 128274 29752071 ~ 29760972 (+) True LOC113539887
XM_026935838.2 mRNA downstream 343874 29967671 ~ 29976291 (+) True rgs18
XM_026936318.2 mRNA downstream 362388 29986185 ~ 29989435 (+) True rgs1
TU86406 other upstream 708007 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1998728 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1999434 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2062209 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 2063463 27556517 ~ 27556648 (+) True LOC113540695
TU87615 other downstream 1122334 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1122334 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1437933 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1727464 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 2146025 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile