RNA id: XM_026935837.2


Basic Information

Item Value
RNA id XM_026935837.2
length 5321
RNA type mRNA
GC content 0.42
exon number 2
gene id zgc:153115
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29673514 ~ 29681175 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcaaAGGAACGGGGTGGGAACCGAGGCATCGTCCGCGCGCCCCCTGCGCTTTTGTTGTTTCGGCGTGGAAATACGACGCGCGCGAGACCATGTCCGTGTTCGCCGACTCCGATTATCTCGCCGCCGAGTGTCTGGTGTCGATCTCGAGCGGTCCCGTGCTTCACCGGGCCAGGGCCCTGCCTCACGGCGAGGCGGAGGGCTCGAGCGAGGACAGGGAGGTGCGCGAGACCCTTAGGCTGGAGGGCGCGGGCGAGGAGGCCGATGTCGTCCTCGCGGACACGCACGCCGCTTTCCGGCCCATGTCCGCTCACTcggagagcagcagcagctcgtCGTCTTCATCGAGCTCGTGCGGCGAGAGCGGCTATGCCACGCTGTGCGACTCAGGCACCGCGACCCCGAACATGACCCCCACCGGTACCCCGGTTCCGGGACAGACAAACCGCAACGCCCCCCAGCAGATGTGGGCagaggcaggaggaggaggaggaggaggggcgGCGCCGCGCTCGCCCTCTAAGCGCCACCCCTGCACTTTCGACGGATGCGACCGAGTGTACGGCAAATCATCTCACCTGAAGGCGCAcatcaggacacacacagGTGAGAGGCCGTTTCCATGCACCTGGGCCAACTGCGAGAAGAAATTCGCCCGCTCCGACGAGCTGGCACGCCACCTGCGCACCCACACGGGTGAGAAGCGCTTCCAGTGCCCGCTCTGTGCCAAACGCTTCATGCGCAGTGACCACCTGATCAAGCACGCACGCCGCCACCCCGACTTCCACCCATCCATGATCGGACGCAGGGGACATGGTTCACCCCAGGGTCAAGGGTCATCCATCAGCACACAGTCTCAGTAAACCAGCAGCATCCACTTCACAACCTAAACCCAGTCGGACACCTTTCCATAGCAATGCAGCCCCTTTTTTAACACATAAGCCACCTGTTTGAACACCAAATAGTGTTCGAAAGTTCTCACTCCCCTTGAATCCCATCGCCTCGTCTTCCCTCGAGTCCAGTTGTGAGTTCGAGCCGGTCGTTTGCCTCAACACAATAATCCTGGTGCAATTGTATCCTCCAACATGAATGACGACTGATGTCAAATCTGCTGCAAGAATTCCACGTGTTGTAGATCCTTTTAGCTCTCCAAGCCTCTCTTGCCACAAGCACAACACGCTACTCCTTCCAGGCAGTGAAGCTATTTCGGGTTGACAAGATGGCCGCCCGCAACGCAGCACAATCCTCACTCTCGGATTCTTCGGTTGTTTCTGAAAGTCTGCTTTAGTTACATCACTTCTCAGTCATGTTTGAGAtgtccttttctctttttctggtTTACGGGTGTGGATCTTAATCCCCCAATTAAACGGACACTGTTTGAAATTGCTGTCATTCCAGGTTAGGTTTGCGTTCCAGTACTGTTTTTAATACCCCCTTATTGGCATTCCTTCACGGCCGCGTCGCAATACTAAAAGTGGCCACTTACttgcaaaacaacacaaaaaacactCGCTCTTAGCAGGAAGCACAGTGTATTCGAAGCGAATAACAGCCTGCTAACTAACTAGTTAACTGTCTAAGCGTGCTACCTAGCTGGCTAGTGTGCTAAACAGCTGGAttgttaattagctagcttgctcAAGCTAGTCAGATTAGCTGTCATGACTAGCTTCAAACCGAGCGAATCAATGTTAAAGTTttgaaatattaatacattttacgGCTGCTTATTTTTCTAAACGGCGCCATCTGacactttttcctgttttgaaCAGAACGTTAGATCTGCGTTAGTTCTTAACGACTTCTCGGTACGCCGGGTGTGCAGGTATTCAAGTGAAATTTACTTTTTAAGATTCTGAAGCCTGatactgaatatataaataacataatacTTCAAAATGACTAAGACAtaagcaaaactgtttgtgtattcaggaaaaaataaatgaaagatggCACCACTGATTTCTCAAGGTTTCATCTAACAAAACCTAGCTCTAGTGAAGCTTGGAATATCGCTAAAAATAGTGACCGATTCAGCCAAGGATAAACGAGGGCATGAAAACAGTACTGGAATGCAGTCTTAGATGAACCACCTCATCTCTTCACATGGTGCTCTATTTCCAGTTCTTCTGTAACTGACTGTAAGAgttcaaaatggcaaaaaaaaaatacctgtaACTCGGTTGTTAATATACACAGAACTCACAAAATGTCTGTTcacagttgtgtgtttttggaagTTGGTTTACATGTAACTGCGCCGCTGTGCTTGAGCGCCAGTGATGTTCGTTTATATAACTAATGACGGTAATTAACAATATCGATAATGAAATTAATGAtggaaagtgaaagagaaatatTTACTCTTTAATATTGTcataagttattatttttttcctcgcAATTACCTTTTGTTTGCgcaatttatatacacacacatatatatctatatatatatattagaagtATATGTATTTGGTTTTAATTTTGTCTTTCCAAAATTGTAATATCAACACTGATGATCCATGGCCACTGAAACGGTTAAATGGTTCGACGTGTTTTTAGGTCATTTGCCTGTTAGTTATTTCTCATAAaacaacttcttttttttaaataattattatcaaaatatttaGACCTGTAACCTCATGCTGGAGGGTTGCAGATAGCTTGTCatccgcgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtgtgggtatagCTATGGTTGAAGCTTCTACAGTAGAGATGTTACATAAATTATAATGGTTTATTGACCTTAGGGATAAAGGGCACTCGGTTGCTTTATCAGATGGGCTGGTGCTTCTTGCTTGTGTGTGAACGTAtgccatgtgtgtatgtgcgtatgTATAAGAGAGAAcgctaatctctctctctctctccaaacaCATCTATCTCAGAGAACAATGTAAACACATCAGGAATTTCAGAAAGCCTTAATTCCTCTCCGACTTATTTTGCACCATTGTTTACCGTTACACACTTTCTACAGGTAACGTCTGCCgcagggttttttctttttcttttttttttcctcaacaaaataaaatacaaatatgcaATATTGCACTTTTCTTCtaggtggtggtgatgatgatgatgataatgatgatgcaTCTGTCTGCTAGTGTGATGGGTAacactgtataaatatatacgactgcaaaaatataaaaaaaaaattaaaaataaataaggaacaCTGTGGAATTGGAGCAGGACCCGtcacggaaaaaaaaaacaaaaaaacacattagtCTTGGGATGCACCTTTTTCCAAGTGCTTGAATAAGTGCGACAAAGGGAAGAAACTGACCTGATCGTTCAcagaaatttttttatatttgttttttctgtgctatcatttttgttttttattctttcttggATAAAGATCAGTCGAACGAACTCCGGCATCACTTTTCtcatccttctttcctttccatccacacaaaaagattttttatattgtttctAATACGAGATGACGGTATCTGCATCCACGCACATAACGCAATACAAGGACTGCAACAGGTAGCTGCTGGCAGTTATCTGAACTGTAACACATCAAAAACGTCAAACTaatgaaaatgcaaagaaaagtCAGTCTCAACGGGTTTCAAAAAAACAAGCCAATATCATACCTCTGGTCACTTGTGTCAAGAACTTGACTGTGTCTGTCGTGCTGTTTATAGCAAATGGTTTTTGGCATTAGCCGTTCACCACACACCAACATTTAGCCATAATGGACTTCACTTTGTCACATTTCAATTGATTTCAAGTTAAAATGCCTTTCTGATGAATTCAACCCCTCATTCAAAAACCCCCCTTCCTATATCTAATCAGTTTGCAGTTAGCGCTAGCACTGCTAATTCTTGGCCAGTAAATGCTGTTGCAAAAACCACAAAGTCATATTTTTCTTGTCTTTAAAATTGTCTTCccttgtttttgctttacactttttttcttttatattctaAATGTGTCACATGCTGTGTATTAGTGCTTGGGTGtaaaaggaaacaaacaaagctaatgttgctaacaaccAGCAGTAGCTGGTTAGCATTATGCAAGTGAGATCATGCTAACCATGTTTAGCTTTATTAGCCATCTTAGCCTTTGTGGAATAAAGTTTCTTTGGTGACCTGTAGTGGCCTTCTAGGTAGTTTATGATGAAGTCCATGCTAGTTTGGTAGGTTAgcggtttttgtttttctttcctcagtGGGTGTCTCAATGCAAAAACAACCCCATGTCTCTTGTCTGTCAGTTCTGTTCTTGTTAGTATTGTTTAACCTTTTTGACTTTTATTGTCACTAATCTTTTtcctgtgctgttttttttttttaatttttgtattttaaaagttttatctTTGCATGTCAAAGGAATGCTCAGTACAGAAATGCTAGCATtgctaataatgaacagaagaCTTTAACCTACTTAAAGTAGTGTCTTTTTGTCCCTTTTAGTTTGTCttacttttgtgttttaaaacatgtcacacacaaaaatgtgaaTGTTGCTAGTAGCACGGAATGCAATTCTGtcagttttatgcaaattatatcATGCTAACTGATCAGTCCTACTGTTTATTAGCCATGTTAGCATTTATGAGTGAAGCATTCCTCTGACGGTCTTGTGTAACCTATAAAGTATGTATAGCGATACCCTCTGAGGCAGTTTAGGATGAAGCCTGTGTAACTGGAATAGTTTAGCTGTTAAATGTAGTAATAACAGCCAGTAAATCTTGGTTGGAGCCCCGATGTTTTTATAAGTCTGTCCAAACCGGtattacttgtgtgtgttttatttcggTCAGTCGTAGTGAGAGAAAAGCTAATCTTGGTATAAAAAGCTGCCTTCTTGCTTCGTGTCAATCCAACCTTGACCTCATTTattctaaagtttttttttttttttttttggtacacaCTAAAACCAAATACACACCATTTTTCTGCAGGTCAGCGATCACACTAATAAGTCTGTCAAGACTGCATCAAAGTCTCTTTCCTTTCACGGGGTTATGACCTCGTCAGGATTTGGGCTTTAATGCATCTCCTCAGGTGATAAAACTGAATGCTGAGAACCTCCGTTCTTCACCGATGTATAAGCATGATGTTTTTTTATGGTCGGTTTTATTTTGGTATTCCTCTGctgatttaatttattacatgctatttgtgtggggttttttttttcgtagTGCATTGTGAGGTATGAAACTTTGCTAATATTTGGGTTAATTGATTGCCTCAACTACAAGAAACTGCcagtgctt

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86683 lncRNA upstream 43882 29629593 ~ 29629823 (+) True G73118
TU86653 lncRNA upstream 132270 29541095 ~ 29541435 (+) True G73092
TU86650 lncRNA upstream 146787 29526202 ~ 29526918 (+) True G73089
TU86649 lncRNA upstream 148869 29524298 ~ 29524836 (+) True G73088
TU86633 lncRNA upstream 149463 29483262 ~ 29524242 (+) True G73072
TU86717 lncRNA downstream 31295 29712470 ~ 29712682 (+) True G73151
TU86720 lncRNA downstream 37287 29718462 ~ 29719317 (+) True G73154
TU86688 lncRNA downstream 40891 29722066 ~ 29723750 (+) True G73123
TU86721 lncRNA downstream 51476 29732651 ~ 29733363 (+) True G73155
TU86735 lncRNA downstream 83945 29765120 ~ 29766106 (+) True G73169
XM_034304047.1 mRNA upstream 49908 29620111 ~ 29623797 (+) True asip2b
XM_034303440.1 mRNA upstream 70875 29596466 ~ 29602830 (+) True LOC113540482
XM_034303438.1 mRNA upstream 70875 29596466 ~ 29602830 (+) False LOC113540482
XM_034303441.1 mRNA upstream 70875 29596466 ~ 29602830 (+) False LOC113540482
XM_034303439.1 mRNA upstream 70875 29596466 ~ 29602830 (+) False LOC113540482
XM_034303651.1 mRNA downstream 23313 29704488 ~ 29720768 (+) True rc3h1b
XM_026935987.2 mRNA downstream 70896 29752071 ~ 29760972 (+) True LOC113539887
XM_026935838.2 mRNA downstream 286496 29967671 ~ 29976291 (+) True rgs18
XM_026936318.2 mRNA downstream 305010 29986185 ~ 29989435 (+) True rgs1
XM_026936317.2 mRNA downstream 317329 29998504 ~ 30001345 (+) True rgs13
TU86682 other upstream 50668 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 761601 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2052322 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2053028 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2115803 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 1064956 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1064956 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1380555 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1670086 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 2088647 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile