RNA id: TU86688


Basic Information

Item Value
RNA id TU86688
length 1460
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G73123
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29722066 ~ 29723750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGAGCCGCGTAGCCGTGCAGAGACGGAGCGGACATTTTGTAAATGAAGTTTTGAGGGTTTCGTGTGTTTCTTGTGCTAGACAAGCATCCGCTTGCAAATAGTCGTCCTAGACGTGGAAAAAATCTCGCTAATCCAAATAATCGGCTTGCTTCCAGATGGAAAGGCAGCCTTCTTTGTCGTAATGGTCACTTTTTgcattatataaacattttgaggTTTTTGAAATGATGCTAATTTCTTTTGTCCTTGATTAAGGTCCACTTATGCTGTTCGCACAGTCGAAAACTTTGCCGCAGTCCAAGAATTGCTCGTGTGTTGTACATCCACAcaggtgccaacattgctagCAAGAGAATCTAAGCAGGCAGGAAGAACAAACTGAATTTGCAGGAAGTGAAATTAACTGCTGAACGCATGTCTTTTACATCCgacgtcctttccccttctgtGATTTGCCTTTTCCACCGATGTTTGGTTTGAGCAGAAGTTTTCAGCTGTCTCCCATATCGCTGTAACAAAGggtcaaaaatatttaaaaatatatactgctTGAGTgaagcaacagaaaagcatttgccgTATCGTTGCGAAGCGCAAGTCCGTATCTCATCAGTTATGCActgagtccaagagagcaaaactgggcGTGAGTAACGGTGTTACGGACAACCGCAGTGACGTTAGCCAATCGTGAGCTGGTTTAAGCtcctgtatgtggaagagggcagatagcgcaaACTTCCAGGCTGGTGGCCGTCGTGTTACAGAACTAGcgagtgggtgggaattggcaaaaatgatcaaattaggAGAAAATTGTGGATTTCACTCAAGCTGTAGACGTTGGCACCTCTGAATCCAGAATAGCTACAAACCTCCGAAATGTCGTGACAGTTTTTCTGGTCACAAACACTGAGCCTGTCAAAATTCATTTCATGTTCAAAGTCCAACCAAAATGTTCTGGAAGGACAAACCTTTGAAGAAAAGCCTATAGCTGATTAAAAAAGAATCAATCTTGGATTTATAAGCTTTAGCGGTTAAAACATGCTAGTATTTAAATAAGCAGACTGAATCCTTCTGAGTGGATGTTTAGAAAGACacacaggattttaaaaatttctgAGTTTTCTTCGTTGTTTGGTGACCAATCAAAGCAAAGCCAGCTCTATCGACAAACTCCTTCAAGCTAACGTTGGCTAACTGTGCAGGAGAGATGATGGATGTCTGTAGACAAGATGGATGAGAAATAGGAAACTAGCATCTTGTAATCTTTAGCGTAAAATAATCGTTGAAGAAATTTactgaaaagaaatgtatgaaaataatcctAGGTCACATCACGTACCTGCCTCCTGGGTTGTCGTCTTTTTGATTTGTCGCCTGATTGAACAAACatGAGGGGCGCATAGCTAGATAGCTAGGATGCTaattttatttagattatttgGGAACGTGCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86720 lncRNA upstream 2749 29718462 ~ 29719317 (+) True G73154
TU86717 lncRNA upstream 9384 29712470 ~ 29712682 (+) True G73151
TU86686 lncRNA upstream 40925 29673514 ~ 29681141 (+) False zgc:153115
TU86683 lncRNA upstream 92243 29629593 ~ 29629823 (+) True G73118
TU86653 lncRNA upstream 180631 29541095 ~ 29541435 (+) True G73092
TU86721 lncRNA downstream 8901 29732651 ~ 29733363 (+) True G73155
TU86735 lncRNA downstream 41370 29765120 ~ 29766106 (+) True G73169
TU86755 lncRNA downstream 68766 29792516 ~ 29794205 (+) True G73185
TU87101 lncRNA downstream 206188 29929938 ~ 29930168 (+) True G73512
TU87134 lncRNA downstream 308560 30032310 ~ 30032788 (+) True G73533
XM_034303651.1 mRNA upstream 1298 29704488 ~ 29720768 (+) True rc3h1b
XM_026935837.2 mRNA upstream 40891 29673705 ~ 29681175 (+) True zgc:153115
XM_034304047.1 mRNA upstream 98269 29620111 ~ 29623797 (+) True asip2b
XM_034303438.1 mRNA upstream 119236 29596466 ~ 29602830 (+) False LOC113540482
XM_026935987.2 mRNA downstream 28321 29752071 ~ 29760972 (+) True LOC113539887
XM_026935838.2 mRNA downstream 243921 29967671 ~ 29976291 (+) True rgs18
XM_026936318.2 mRNA downstream 262435 29986185 ~ 29989435 (+) True rgs1
XM_026936317.2 mRNA downstream 274754 29998504 ~ 30001345 (+) True rgs13
XM_034303701.1 mRNA downstream 290905 30014655 ~ 30022571 (+) True blvra
TU86682 other upstream 99029 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 809962 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2100683 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2101389 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2164164 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 1022381 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1022381 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1337980 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1627511 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 2046072 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile