RNA id: TU86735


Basic Information

Item Value
RNA id TU86735
length 987
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G73169
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29765120 ~ 29766106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGAAAATTATAAAGTGACCAATATGCACAAGACTGAACAGAAGTAATGGCAGTCAGAGTCAAAATACGAGCAGTGACTAGCAAATAAGgaaggaacaacaacaacaacaaaaaaaaacaaccttcaaattaaccttttttttttttttggtccaagCATTTACTTGGGACAGTAGGACACAACATGATATCTTGAAGAGGAGCCTTTCCGATTATTGCAGATGCACTGAAGTGAATCTAAGTTTATGACGGGCAAGAGCAGCCTGGCTCCTGCGCACCACAATggtaataacaacaataacacccTGGAGTGGGAACCTTACGCCTTTCCTGTTGCTCCTGGAATGTAACAGTCCATTTTAACTGGACCCAGGACAGAGCCCTGAGGCACGCCACTTTACAATCCTCAATTATTACAGGCGCTGGAGACATTTCCCGAGCTTTGGATCGCAGTGGAACAAAAGAAAGTCCATAATCTCTTCAAACAAGACAAGACCGCTAAACACAGGTACTTTTCCTggttttgtattaaaaaaaaaaaaaaacccttaggTGGCATTTACGGACTAGCTGTAACTCTGGAAGacatccatttaaaaaaaaaagaaagagagaaaaaaaaaaaaggaagtggaCAGAGCTCAGCTCATGTGGAATGCACGCACACTGGAATGTGATGGATagctttacaaaataaatatatgctcATGTTCAGTGTAGGTTCTAgttcaagaagaagaagaagacgaagatGATGGGTTTCTAGTGATGctaaaaggagaagaaaaacacGTTACAGCTTATCATTTTGCTAATGCAGACCTGCTCATTTAAAGTCCAGGCCTTAATTCCCTGCTCGAATCACGACAAAGCTCTCGTGGAATGTTCCATTTGGCGTGCTCTTGAATGAGCCATATAGCTAAAAACCCTGCGGGATGGAAACTCCCGCAGGTTCTAACGAAGCAGCACTGGTTCAGATTGCATTGGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86721 lncRNA upstream 31757 29732651 ~ 29733363 (+) True G73155
TU86688 lncRNA upstream 41370 29722066 ~ 29723750 (+) True G73123
TU86720 lncRNA upstream 45803 29718462 ~ 29719317 (+) True G73154
TU86717 lncRNA upstream 52438 29712470 ~ 29712682 (+) True G73151
TU86686 lncRNA upstream 83979 29673514 ~ 29681141 (+) False zgc:153115
TU86755 lncRNA downstream 26410 29792516 ~ 29794205 (+) True G73185
TU87101 lncRNA downstream 163832 29929938 ~ 29930168 (+) True G73512
TU87134 lncRNA downstream 266204 30032310 ~ 30032788 (+) True G73533
TU87172 lncRNA downstream 318332 30084438 ~ 30084819 (+) True G73564
TU87146 lncRNA downstream 344506 30110612 ~ 30111156 (+) True G73545
XM_026935987.2 mRNA upstream 4148 29752071 ~ 29760972 (+) True LOC113539887
XM_034303651.1 mRNA upstream 44352 29704488 ~ 29720768 (+) True rc3h1b
XM_026935837.2 mRNA upstream 83945 29673705 ~ 29681175 (+) True zgc:153115
XM_034304047.1 mRNA upstream 141323 29620111 ~ 29623797 (+) True asip2b
XM_034303441.1 mRNA upstream 162290 29596466 ~ 29602830 (+) False LOC113540482
XM_026935838.2 mRNA downstream 201565 29967671 ~ 29976291 (+) True rgs18
XM_026936318.2 mRNA downstream 220079 29986185 ~ 29989435 (+) True rgs1
XM_026936317.2 mRNA downstream 232398 29998504 ~ 30001345 (+) True rgs13
XM_034303701.1 mRNA downstream 248549 30014655 ~ 30022571 (+) True blvra
XM_026937116.2 mRNA downstream 279789 30045895 ~ 30050490 (+) True ebi3
TU86682 other upstream 142083 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 853016 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2143737 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2144443 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2207218 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 980025 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 980025 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1295624 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1585155 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 2003716 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile