Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU86785 |
| length | 620 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 3 |
| gene id | LOC113540203 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28940662 ~ 29029191 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577988.1 | lncRNA | downstream | 43863 | 28892016 ~ 28896799 (-) | False | LOC117597038 |
| XR_004577986.1 | lncRNA | downstream | 43863 | 28892016 ~ 28896799 (-) | False | LOC117597038 |
| XR_004577987.1 | lncRNA | downstream | 43863 | 28892016 ~ 28896799 (-) | False | LOC117597038 |
| XR_004577985.1 | lncRNA | downstream | 43863 | 28892016 ~ 28896799 (-) | True | LOC117597038 |
| TU86430 | lncRNA | downstream | 106942 | 28832384 ~ 28833720 (-) | True | G72893 |
| TU86836 | lncRNA | upstream | 14573 | 29043760 ~ 29043970 (-) | True | G73264 |
| TU86819 | lncRNA | upstream | 24410 | 29053597 ~ 29054227 (-) | True | G73248 |
| TU86818 | lncRNA | upstream | 98868 | 29128055 ~ 29196167 (-) | True | G73247 |
| TU86820 | lncRNA | upstream | 158971 | 29188158 ~ 29189340 (-) | True | G73249 |
| TU86821 | lncRNA | upstream | 159429 | 29188616 ~ 29189340 (-) | False | G73249 |
| XM_034303525.1 | mRNA | downstream | 22510 | 28913679 ~ 28918152 (-) | True | LOC113540041 |
| XM_034303523.1 | mRNA | downstream | 22513 | 28911613 ~ 28918149 (-) | False | LOC113540041 |
| XM_034303526.1 | mRNA | downstream | 60460 | 28877573 ~ 28880202 (-) | True | LOC117597036 |
| XM_034303527.1 | mRNA | downstream | 63759 | 28873579 ~ 28876903 (-) | False | LOC117597037 |
| XM_026936503.2 | mRNA | downstream | 79219 | 28842922 ~ 28861443 (-) | True | gipc2 |
| XM_026936498.2 | mRNA | upstream | 25825 | 29055012 ~ 29077436 (-) | True | pigk |
| XM_026936482.2 | mRNA | upstream | 101999 | 29131186 ~ 29147492 (-) | False | zzz3 |
| XM_026936483.2 | mRNA | upstream | 101999 | 29131186 ~ 29147359 (-) | True | zzz3 |
| XM_034303995.1 | mRNA | upstream | 121334 | 29150521 ~ 29171921 (-) | True | usp33 |
| XM_034304142.1 | mRNA | upstream | 271119 | 29300306 ~ 29322917 (-) | False | dipk2aa |
| XR_004577982.1 | other | downstream | 55697 | 28873580 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577983.1 | other | downstream | 55697 | 28882327 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577984.1 | other | downstream | 58498 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
| XR_004578096.1 | other | downstream | 288237 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| trnas-uga_2 | other | downstream | 703857 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| TU86878 | other | upstream | 119451 | 29148638 ~ 29152381 (-) | False | usp33 |
| XR_003404076.1 | other | upstream | 494207 | 29523394 ~ 29523466 (-) | True | LOC113540702 |
| XR_003404072.2 | other | upstream | 494536 | 29523723 ~ 29523912 (-) | True | LOC113540698 |
| XR_003404071.2 | other | upstream | 495322 | 29524509 ~ 29524687 (-) | True | LOC113540697 |
| XR_003404077.1 | other | upstream | 495802 | 29524989 ~ 29525061 (-) | True | LOC113540703 |
