RNA id: TU86813


Basic Information

Item Value
RNA id TU86813
length 1772
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G73243
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28986472 ~ 28988383 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGTTTGCAattctttgcaaaaaaaaaaaaaaaaaaaaatcacacacaatgaaaacacaaaatatcGAAAAACCACAACTGATTTgcagaaattacattttagaaaCAAATTCAGCACACTTAGCAAGATGCCTTTGCAAGATCACATGAACAGCGGAGAAGCCGATTCctttcaaaaatacattttaaaaaaaaatgtttttatacatttaccTTAGTGTTGCTACAGAAATGAATTCCTAAACTCATGTGAACATTATCATATCTGTatggacaaaataaaacacagattgTGTCCCAAACGCTGGcgtgataaatgtgttttaactaGAATTCACTCTAATGTTTAAATTAGAGCGAATGTTAGCCAAAGCAAGGGTGTGAAGAGATTAAAGTAGATCCGTTAATGTCGAGTAAGGATGTGTAAACCACATGTAATTGGATTTTcttattgaaaaaaagaaaaagaaaacagaaaagcagtGTTTACCTCCAGAATtcttaataatacattaaacagaatttacttaaataatagaaatttgacctttttttatttcttttaatgaaaaatatgctTTCCTGATCTGGGTTTCTctagaatataaataaataaaaatactaataaaactaaaaatataaataaaaagaataaaaggtcaaattaaaaattcaaaattttcCCAAAATTCCATtaattataaaagtaaatatataataactgtcACACCTACATCTAATTATTATatgccaataataataaatatgccGGATACTAATTTTTATTCATACACCACAAGATTACATAAAATCAGTGTTAGTTGATGTTTTAAATTCAATTCCAATCAATGAACTTGGAATGTTTCTCTCTTTAACATGGAATCTACCTTTTAACATATACATTATGCTTTTTATGGTGcaaaaattgtgtgaaaaacCAAGAATCCGGATGCTTGAGACAGGGTACACATGGACAAGTCGCTAGCAATCATATTTACTAGCTAGCAATCATCCGACAGAGCACAAGGATGCTAaacaaatattaacataatataGCTAACACTGTATTACTAACAGTCCCCATTAATGGTCATTATTAACTATGCATTTGGGATACGTTAGCATTCTAGCATTCCTACAGCTACATGTTTCTTTAAATTCCAGCGTTTGGGACACGAAACTGGAGTTAGAAAAAGGACACTTGATGCACGAAAGCAAACATTTCCAACACAAACTTCAAAAGATACATAAAAAGCACTTAAGATAATAACACTTAAAACAGGGACGTGCGCTGTACCTTGtgaacattcacacactcttgcCGTATGTACAGGAACATTTGCAGCCGAACTGTTAAAAGgcatcatgaaaaaaaaaacgaggtGGTGagagtgacattttttttttgaagagaaACTCACAAACTGTGACCTGAAGACCACAAACAGGGGACTAATACAGAAATGCATCAGAGTGAAAAAAGCACTGCTTTTTTAGTGAAGTGAAAAATCTGATTGTGGATCAGAACCGTAAATAAGATCTATTTAAACACAACATTATTGTTCACTGCATTTTATATGTCACTCCTGCCTTACTGGTCACCTTGTAGATCTGAAGCTCATCTTTTCCGTGCACAATGTGTGTTAATCATCTTCTACTCTACATGTGTGCATCATAACCCAGCCCAAAAGTCACGGCAGTGGGCAGGTTTTACTTTCACGCAGGCTACAGTGTGTGGGGTGgttagatatgaagctcatgggacAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577988.1 lncRNA downstream 89673 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA downstream 89673 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA downstream 89673 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA downstream 89673 28892016 ~ 28896799 (-) True LOC117597038
TU86430 lncRNA downstream 152752 28832384 ~ 28833720 (-) True G72893
XR_004577953.1 lncRNA upstream 24857 29013240 ~ 29029191 (-) False LOC113540203
XR_004577955.1 lncRNA upstream 26631 29015014 ~ 29029191 (-) True LOC113540203
XR_004577954.1 lncRNA upstream 39282 29027665 ~ 29029191 (-) False LOC113540203
TU86836 lncRNA upstream 55377 29043760 ~ 29043970 (-) True G73264
TU86819 lncRNA upstream 65214 29053597 ~ 29054227 (-) True G73248
XM_034303525.1 mRNA downstream 68320 28913679 ~ 28918152 (-) True LOC113540041
XM_034303523.1 mRNA downstream 68323 28911613 ~ 28918149 (-) False LOC113540041
XM_034303526.1 mRNA downstream 106270 28877573 ~ 28880202 (-) True LOC117597036
XM_034303527.1 mRNA downstream 109569 28873579 ~ 28876903 (-) False LOC117597037
XM_026936503.2 mRNA downstream 125029 28842922 ~ 28861443 (-) True gipc2
XM_026936498.2 mRNA upstream 66629 29055012 ~ 29077436 (-) True pigk
XM_026936482.2 mRNA upstream 142803 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA upstream 142803 29131186 ~ 29147359 (-) True zzz3
XM_034303995.1 mRNA upstream 162138 29150521 ~ 29171921 (-) True usp33
XM_034304142.1 mRNA upstream 311923 29300306 ~ 29322917 (-) False dipk2aa
XR_004577982.1 other downstream 101507 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 101507 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 104308 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 334047 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 749667 28236724 ~ 28236805 (-) True trnas-uga_2
TU86878 other upstream 160255 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 535011 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 535340 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 536126 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 536606 29524989 ~ 29525061 (-) True LOC113540703

Expression Profile