RNA id: TU86819


Basic Information

Item Value
RNA id TU86819
length 631
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G73248
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29053597 ~ 29054227 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaCTGTTCCTTAACCTGTTCTTGTTTTTCCAGAAGttacaaaaaaatctattttcattaaatttgccTGCGCAAACAAAAATTGTAGCAGGTTTTAGCAATTTTAGAACTTTGAATTGAATATAATTTCGTAAAATTGCGTCAAAAAAGTAATGCATTTTTTCAATAACGGATATCATCTTTTCTATTAGCGTCAGACTTTTGGACATGATGCACCTGTGGGTGAGCAGACAAGGGCTAGGAATTATGGGTAATTTTTGAATGTGAAGTTCTTTCAATGTTCACTATCCACTATCGaggacttttattattttatcaaagAGCAcgctgtttaaaaataaaatcagttctgGAGCTTTTTCGGGAATGGACGGAATGTAATATTCTCTTCACATTGGTGTACAGACTCCATTCTATCACAGCACTCTTGAATTCTCCGTTCTGATTGGTCGCAAGGTGTTCATTAACAGTCGTTgtctatcatttctatagtaacagctaacagTATGGTGGCACCTAATCTAAGGCTAATGATATCCAgatgtaaaaaatgtgttttattttatacaaagaaaaactttaaaTGGTGTCTGGAAGGTTTCCAtgaagagatgtttgtttaacatcgagg

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86836 lncRNA downstream 9627 29043760 ~ 29043970 (-) True G73264
XR_003404005.2 lncRNA downstream 24406 28941049 ~ 29029191 (-) False LOC113540203
TU86818 lncRNA upstream 73828 29128055 ~ 29196167 (-) True G73247
TU86820 lncRNA upstream 133931 29188158 ~ 29189340 (-) True G73249
TU86821 lncRNA upstream 134389 29188616 ~ 29189340 (-) False G73249
TU86892 lncRNA upstream 159326 29213553 ~ 29215051 (-) True G73318
TU86893 lncRNA upstream 162043 29216270 ~ 29218158 (-) True G73319
XM_034303525.1 mRNA downstream 135445 28913679 ~ 28918152 (-) True LOC113540041
XM_034303523.1 mRNA downstream 135448 28911613 ~ 28918149 (-) False LOC113540041
XM_034303526.1 mRNA downstream 173395 28877573 ~ 28880202 (-) True LOC117597036
XM_034303527.1 mRNA downstream 176694 28873579 ~ 28876903 (-) False LOC117597037
XM_026936503.2 mRNA downstream 192154 28842922 ~ 28861443 (-) True gipc2
XM_026936498.2 mRNA upstream 785 29055012 ~ 29077436 (-) True pigk
XM_026936482.2 mRNA upstream 76959 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA upstream 76959 29131186 ~ 29147359 (-) True zzz3
XM_034303995.1 mRNA upstream 96294 29150521 ~ 29171921 (-) True usp33
XM_034304142.1 mRNA upstream 246079 29300306 ~ 29322917 (-) False dipk2aa
XR_004577982.1 other downstream 168632 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 168632 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 171433 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 401172 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 816792 28236724 ~ 28236805 (-) True trnas-uga_2
TU86878 other upstream 94411 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 469167 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 469496 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 470282 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 470762 29524989 ~ 29525061 (-) True LOC113540703

Expression Profile