RNA id: TU86821


Basic Information

Item Value
RNA id TU86821
length 486
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id G73249
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29188158 ~ 29189340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGACTGACCTTTGCCAATAATAAGGCCGGTCTTAACGGTGGGAACAGTGAAGGAGAACTCCTGCAGGCCCCCTGGTGGCCCCATGTTCCAGTTACCGTGGCCACGACCTCTGCCCCTGCCCCCGGGGCCTGGTGGACCGCCAGCCTGCACACTGCGCAACAGGTCTGTAATGATGCTGGCTGCATGCTGCGCCCGATCAGGGGGACCCATGATCTGAGCGATCCTGTCTGGTGTGGTGCCGTCGTctggTTTGAACTGAATCTTAACACCGGTGTCGTTCTGAATCTTCTTGATCATTTCGCCGTTCCTGCCGATCACAATCCCCACTGCGAAGCGCGGCACAGGAACATCCAAACCTTCTCCACCACCCATCCGTGATCCGTATTCGCCCCTCTGCTCTCGGAAACCCTGGTCTCTGATCAGGTCCATCACCATGTCTTTTGCTTGCTGGAAGTAAAGTGACCGTTTAACAGATCTTAAAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86819 lncRNA downstream 134389 29053597 ~ 29054227 (-) True G73248
TU86836 lncRNA downstream 144646 29043760 ~ 29043970 (-) True G73264
XR_004577953.1 lncRNA downstream 159425 29013240 ~ 29029191 (-) False LOC113540203
TU86892 lncRNA upstream 24213 29213553 ~ 29215051 (-) True G73318
TU86893 lncRNA upstream 26930 29216270 ~ 29218158 (-) True G73319
TU86901 lncRNA upstream 84249 29273589 ~ 29320334 (-) True G73327
TU87006 lncRNA upstream 350755 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 418261 29607601 ~ 29607805 (-) True G73439
XM_034303995.1 mRNA downstream 16695 29150521 ~ 29171921 (-) True usp33
XM_026936482.2 mRNA downstream 41124 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA downstream 41257 29131186 ~ 29147359 (-) True zzz3
XM_026936498.2 mRNA downstream 111180 29055012 ~ 29077436 (-) True pigk
XM_034303525.1 mRNA downstream 270464 28913679 ~ 28918152 (-) True LOC113540041
XM_034304142.1 mRNA upstream 110966 29300306 ~ 29322917 (-) False dipk2aa
XM_034304140.1 mRNA upstream 110966 29300306 ~ 29322917 (-) False dipk2aa
XM_034304141.1 mRNA upstream 110966 29300306 ~ 29322917 (-) True dipk2aa
XM_026936180.2 mRNA upstream 143779 29333119 ~ 29336703 (-) True chst2a
XM_034303445.1 mRNA upstream 170160 29359500 ~ 29371526 (-) True pcolce2a
TU86878 other downstream 36235 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 303651 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 303651 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 306452 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 536191 28648324 ~ 28652425 (-) False LOC113540437
XR_003404076.1 other upstream 334054 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 334383 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 335169 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 335649 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 375262 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile