RNA id: TU86893


Basic Information

Item Value
RNA id TU86893
length 1862
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G73319
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29216270 ~ 29218158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATACTTATGTACCttgactgtatatgtatatatacatacgtaaatcataaaaatacatataaacacatatatGATACATcgcaatccagaattcaacagctatGTCTACATGAAGAGGCTAGAAGACACAGAACAACTGATTCTTGTTTCTTtattgtgtgtggttttttttttttgttacatgcATTGAGAATAATCactaaaatgtaagaaaataaacaataaacaaaaaaatatatagtttttaaGAATTACTACAAGTGGTGagatagctttttttttaatcttgtaaCAAGACGACTTCATATAACAAAGCTAGTTCGAGGATTTATTGACTTTTAATCACTGTTGCTGTGCATATTATGAAGGTTTCTTAAATACTGAGATGAAGACCTTCGTATAATCAGAATGAaggatttttttccttacaCTCTAACAGCGATGGATATAACGTTAATGACATTTCCGTTTGCGTCGCTCGTTGTGATTACGCGAGCGATGAAGAGAGGAAACGTTAGGAGAACGAGCTCATCTACAATCTCACAACTTTGGAACCCCACCCCATCGAATTAACGCCATGTTCTGGTGTTTCATTATCAACCATTTTGTCCAAAGCATCCTGTttttcttgacttttttttgtgtattacGTGTAACTTTTGCTACAGCAAAAAGAGTACGCTGCTATGAATTTTCATTCAAAAATACGTCAATCGTTCGCTACAGTTTATTGATAGGGATTTAAAACAGTGGCGTTATTTTCGGAGTATTTTCAGCCAAATTCTGGTAAATGCGTAATAACCATTTACTGATTAcatatatacttgtctaatgttagctatgtTGTATAAATCGCAGAAATGTGGAAATAGAAATAGCACGAgttctttaattttctttatattatttaaatgatgcTATTCCTTTGGCCTGATTTACTTTCTTAGCCTGGTTAGTTTGGGTTATGTTCCAGTTTGGTGTATCCGAGTCATCACGAGATCGGGAGTTCTATCTCGGCGATTGCACGGCCATtatgtttcctgttttctttgtGAACATCCAGATCAGACGCTATTCTTAATTGGGTTGTTTTTGTTGGGCGGGTTGAGTCATGCATAGGTTCAAAAATGTTCTCAGTTTTGTTAGAAGTGTGGATAGTAGTCACGGGAAGTTATGACAGAGTCTATAGTCCACAGATGGCCCGATGTGGGTCAGGTGAAACGCCTGCGACGTTTCATTTGGAACACGACTGCCTCTCTAGATGCCTGCGTTAGACGAATCCTCCATTATTGATCAAACCAAACGCATCCACCAGTCACACCCCAGGACGCAGGCTTGTGTTCTGCACCCTGGCAGAAAAAACACCCAGTTCTAGTCAGCCTAGAGACAGGCTGTGTACGTTATGGAAGTGTTAAGAGACTCAGTGTTGTCCATTTTCAACACAAAACCTCTGTTCTTTGGTATTTCTGTTGTAGCAATCTGACTGTAATGGTTTCTTGGGCACCAGTTAAGGCCTAGTCTTTGCCAAACTGACCCAATCAGTGGTGATTCTTTGCTTTCAAAAGATTTCTGTCTAAAGAACTTGGTCACTGTAACATTTACGGTGTATACACAACGACACAACGACACAACGACACAACGACGCGACGGCACAGTGACAGTCGGACAGCTGCTCAGGAAAATTGCGCTATGGAGCCATCTACAGCTTATAACACAAAAGCACATATAAATGAGAAGTCCCATACACGATGTACATGTACAGTGTATTAAAGATACATTGCATACTTGTAGCaagaaagatatatatatattctcatgttatatatatttggGTCCAGCAAAGACGTGAAGCACGGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86892 lncRNA downstream 1219 29213553 ~ 29215051 (-) True G73318
TU86818 lncRNA downstream 20103 29128055 ~ 29196167 (-) True G73247
TU86820 lncRNA downstream 26930 29188158 ~ 29189340 (-) True G73249
TU86821 lncRNA downstream 26930 29188616 ~ 29189340 (-) False G73249
TU86819 lncRNA downstream 162043 29053597 ~ 29054227 (-) True G73248
TU86901 lncRNA upstream 55431 29273589 ~ 29320334 (-) True G73327
TU87006 lncRNA upstream 321937 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 389443 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 453029 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 492928 29711086 ~ 29712194 (-) True G73457
XM_034303995.1 mRNA downstream 44349 29150521 ~ 29171921 (-) True usp33
XM_026936482.2 mRNA downstream 68778 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA downstream 68911 29131186 ~ 29147359 (-) True zzz3
XM_026936498.2 mRNA downstream 138834 29055012 ~ 29077436 (-) True pigk
XM_034303525.1 mRNA downstream 298118 28913679 ~ 28918152 (-) True LOC113540041
XM_034304142.1 mRNA upstream 82148 29300306 ~ 29322917 (-) False dipk2aa
XM_034304140.1 mRNA upstream 82148 29300306 ~ 29322917 (-) False dipk2aa
XM_034304141.1 mRNA upstream 82148 29300306 ~ 29322917 (-) True dipk2aa
XM_026936180.2 mRNA upstream 114961 29333119 ~ 29336703 (-) True chst2a
XM_034303445.1 mRNA upstream 141342 29359500 ~ 29371526 (-) True pcolce2a
TU86878 other downstream 63889 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 331305 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 331305 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 334106 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 563845 28648324 ~ 28652425 (-) False LOC113540437
XR_003404076.1 other upstream 305236 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 305565 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 306351 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 306831 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 346444 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile