RNA id: TU87028


Basic Information

Item Value
RNA id TU87028
length 369
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G73444
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29765747 ~ 29766115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagcatgatgCCAATGCAATCTGAACCAGTGCTGCTTCGTTAGAACCTGCGGGAGTTTCCATCCCGCAGGGTTTTTAGCTATATGGCTCATTCAAGAGCACGCCAAATGGAACATTCCACGAGAGCTTTGTCGTGATTCGAGCAGGGAATTAAGGCCTGGACTTTAAATGAGCAGGTCTGCATTAGCAAAATGATAAGCTGTAACgtgtttttcttctccttttagCATCACTAGAAACCCATCatcttcgtcttcttcttcttcttgaacTAGAACCTACACTGAACATgagcatatatttattttgtaaagctATCCATCACATTCCAGTGTGCGTGCATTCCACATGAGCTGAGCTCTGtccactt

Function

GO:

id name namespace
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87032 lncRNA downstream 115 29765124 ~ 29765632 (-) True G73448
TU87063 lncRNA downstream 1956 29763505 ~ 29763791 (-) True G73479
TU87043 lncRNA downstream 51337 29713999 ~ 29714410 (-) True G73459
TU87042 lncRNA downstream 52301 29712893 ~ 29713446 (-) True G73458
TU87041 lncRNA downstream 53553 29711086 ~ 29712194 (-) True G73457
TU87065 lncRNA upstream 12440 29778555 ~ 29780132 (-) True G73481
TU87071 lncRNA upstream 26097 29792212 ~ 29793644 (-) True G73485
TU87081 lncRNA upstream 80559 29846674 ~ 29846891 (-) True G73492
TU87217 lncRNA upstream 163149 29929264 ~ 29929489 (-) True G73607
TU87230 lncRNA upstream 210556 29976671 ~ 30025036 (-) True G73618
XM_026936015.2 mRNA downstream 17634 29732265 ~ 29748113 (-) True cdc14aa
XM_026935844.2 mRNA downstream 34891 29724588 ~ 29730856 (-) False zgc:110366
XM_026935845.2 mRNA downstream 34891 29724588 ~ 29730856 (-) False zgc:110366
XM_026936229.2 mRNA downstream 60065 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XM_034304044.1 mRNA upstream 93 29766208 ~ 29794142 (-) True xpr1b
XM_026937271.2 mRNA upstream 30955 29797070 ~ 29812557 (-) False ddr2b
XM_026937270.2 mRNA upstream 30955 29797070 ~ 29812557 (-) False ddr2b
XM_026937269.2 mRNA upstream 30955 29797070 ~ 29812557 (-) True ddr2b
XM_026937272.2 mRNA upstream 30955 29797070 ~ 29808991 (-) False ddr2b
XR_003403975.2 other downstream 34890 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 190020 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 240686 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 241060 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 241835 29523723 ~ 29523912 (-) True LOC113540698
TU87233 other upstream 253391 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 975554 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1007348 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2100967 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 2104403 31870518 ~ 31871874 (-) True LOC117597010

Expression Profile