RNA id: TU87065


Basic Information

Item Value
RNA id TU87065
length 1509
lncRNA type intronic
GC content 0.40
exon number 2
gene id G73481
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29778555 ~ 29780132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTGTGAagatgtggaacatctgtgaaccGAACACACTAAACGTTATATATGGCATccgttattatttttaaaaaaatggaaagactATGGCACAAGCATGACTCTGCACAGAGAGCATTCAGTCAGAGAAGCAAGCgcgatgctaccaccaccacgcTTTGCGGAGAATGCATGGCGTTCTCAGGGCGATGATGAGTTGTAGGAAGaagtgctgttgtaggaaagtaatcaacaacaggatggtgTAATGGGGCTGAGGTAATATTGTCACTccaaagtagattattttcctacaagtTTTTTACTCCTTTGTGAGGATAATCTAAAGTGTCCAATGATAAGGAATATCATGCTGGTTCACTACTGTGATGTATGGCATTACAGATTATCAGCATGTACTTTGATTATTGTTCACCTGCCAGCTCTGACCTTCAGTTGTTGGCCTTGTCCTTTATTAAACATCAGTGATAAATTAAGGACAATACGCTGATTATTTACATTCGACATTAACGTCGTATTTGTCATCATTCACGTCTGAAAGCCTGATTCCAAATTACTCACTAGGTCAATATTATTCTGGGAATTCCGCCTGCTTTGTCTGTGTCACAGGAAGAATGAGCGGACATGTTCTTGGCAGCAGAGCAGCCGCTCTCAGTGACTTTCAGTCTCATTTACGACATGCTCATTTGCAAATTTACTTCTGTAAGCTGTACAGAATGCAGAGAAGGCACCAGTAATGTTCATGCTATTCTTCAAAACATAGAtccaaatatacacacaccagcCTTTGCACCACAAGCCTTGAccatggtttttattttttttttccttgctgaAGAGCAAAACATGTTGTGCTTAGTCACGTcgactaagaaaaaaaaaaaaaaaaaaaggaaggacagTTCATCCAAGGCAATAAATGCATAGTTCTGCCATAGCATTGTTAAGgtcttgtttctgattggtcagaagatgtttagttttctataacagtagtaTCTgctgcaaattacaggtttataatGAATGCGCTCATGCACTTtacacagggactcgtatgTGCAAAGAGTACCAGGGAATAACTGTGAatgagctggagagatccacagctcagacgggaagctgttcacaggacaaacccagacactccacaaagctgggctttaCGGAAGATTGGCGAGCCATATGAGCTCCCGTTTGAATATTGAGACCCAACAAACGTGAGAAAAAGaccaaaatgtaactttttgaATATTGCACAAAGGTTTCTATTTGgcagaaacacaacacaacacagcactgaGAACATCtttctcctcagtgaagcatggtggtggcagcatccaCTAGACTTACTCTGAGTATTGCCCTTCTTATCTGGTCACTTACCTTCGGTGGATTCACagttctttcagtttttttactAATGGATTTATTGATGATCTGTGGGATGTTTGAAggttgggattttttttttttttttttttttaaataaccaaacCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87028 lncRNA downstream 12440 29765747 ~ 29766115 (-) True G73444
TU87032 lncRNA downstream 12923 29765124 ~ 29765632 (-) True G73448
TU87063 lncRNA downstream 14764 29763505 ~ 29763791 (-) True G73479
TU87043 lncRNA downstream 64145 29713999 ~ 29714410 (-) True G73459
TU87042 lncRNA downstream 65109 29712893 ~ 29713446 (-) True G73458
TU87071 lncRNA upstream 12080 29792212 ~ 29793644 (-) True G73485
TU87081 lncRNA upstream 66542 29846674 ~ 29846891 (-) True G73492
TU87217 lncRNA upstream 149132 29929264 ~ 29929489 (-) True G73607
TU87230 lncRNA upstream 196539 29976671 ~ 30025036 (-) True G73618
TU87275 lncRNA upstream 315658 30095790 ~ 30097973 (-) True G73652
XM_026936015.2 mRNA downstream 30442 29732265 ~ 29748113 (-) True cdc14aa
XM_026935844.2 mRNA downstream 47699 29724588 ~ 29730856 (-) False zgc:110366
XM_026935845.2 mRNA downstream 47699 29724588 ~ 29730856 (-) False zgc:110366
XM_026936229.2 mRNA downstream 72873 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XM_026937271.2 mRNA upstream 16938 29797070 ~ 29812557 (-) False ddr2b
XM_026937270.2 mRNA upstream 16938 29797070 ~ 29812557 (-) False ddr2b
XM_026937269.2 mRNA upstream 16938 29797070 ~ 29812557 (-) True ddr2b
XM_026937272.2 mRNA upstream 16938 29797070 ~ 29808991 (-) False ddr2b
XM_034304159.1 mRNA upstream 16938 29797070 ~ 29807503 (-) False ddr2b
XR_003403975.2 other downstream 47698 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 202828 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 253494 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 253868 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 254643 29523723 ~ 29523912 (-) True LOC113540698
TU87233 other upstream 239374 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 961537 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 993331 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2086950 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 2090386 31870518 ~ 31871874 (-) True LOC117597010

Expression Profile