RNA id: TU87081


Basic Information

Item Value
RNA id TU87081
length 218
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G73492
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29846674 ~ 29846891 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACAGTGGacagaaatattgaaataaacatattactgctgagttttgacatttttattactgtaGTTTAAGAAcagacattttatacataagcagtttatttaaaaaaaaaccctgcatttCAGTTCCAAGATATAACACTCCAAAATGCGGAAAGATTCAAGGAGGATGGGGGGCTAATACTTATGtaatcacaggtttttttttatctttaatct

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87071 lncRNA downstream 53030 29792212 ~ 29793644 (-) True G73485
TU87065 lncRNA downstream 66542 29778555 ~ 29780132 (-) True G73481
TU87028 lncRNA downstream 80559 29765747 ~ 29766115 (-) True G73444
TU87032 lncRNA downstream 81042 29765124 ~ 29765632 (-) True G73448
TU87063 lncRNA downstream 82883 29763505 ~ 29763791 (-) True G73479
TU87217 lncRNA upstream 82373 29929264 ~ 29929489 (-) True G73607
TU87230 lncRNA upstream 129780 29976671 ~ 30025036 (-) True G73618
TU87275 lncRNA upstream 248899 30095790 ~ 30097973 (-) True G73652
TU87279 lncRNA upstream 254549 30101440 ~ 30102870 (-) True G73656
XR_004578005.1 lncRNA upstream 281837 30128728 ~ 30138872 (-) True LOC113540631
XM_026936933.2 mRNA downstream 11483 29833662 ~ 29835191 (-) True rgs5b
XM_026937273.2 mRNA downstream 21533 29813527 ~ 29825141 (-) True nos1apb
XM_026937271.2 mRNA downstream 34117 29797070 ~ 29812557 (-) False ddr2b
XM_026937270.2 mRNA downstream 34117 29797070 ~ 29812557 (-) False ddr2b
XM_026937269.2 mRNA downstream 34117 29797070 ~ 29812557 (-) True ddr2b
XM_034303426.1 mRNA upstream 21700 29868591 ~ 29899526 (-) True brinp3b
XM_034303703.1 mRNA upstream 56853 29903744 ~ 30014565 (-) False LOC113540096
XM_034303702.1 mRNA upstream 56853 29903744 ~ 30014565 (-) False LOC113540096
XM_034303704.1 mRNA upstream 56853 29903744 ~ 30014565 (-) False LOC113540096
XM_026936321.2 mRNA upstream 162528 30009419 ~ 30014565 (-) True LOC113540096
XR_003403975.2 other downstream 115817 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 270947 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 321613 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 321987 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 322762 29523723 ~ 29523912 (-) True LOC113540698
TU87233 other upstream 172615 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 894778 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 926572 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2020191 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 2023627 31870518 ~ 31871874 (-) True LOC117597010

Expression Profile