Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU87146 |
| length | 545 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G73545 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 30110612 ~ 30111156 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04625 | C-type lectin receptor signaling pathway |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU87172 | lncRNA | upstream | 25793 | 30084438 ~ 30084819 (+) | True | G73564 |
| TU87134 | lncRNA | upstream | 77824 | 30032310 ~ 30032788 (+) | True | G73533 |
| TU87101 | lncRNA | upstream | 180444 | 29929938 ~ 29930168 (+) | True | G73512 |
| TU86755 | lncRNA | upstream | 316407 | 29792516 ~ 29794205 (+) | True | G73185 |
| TU86735 | lncRNA | upstream | 344506 | 29765120 ~ 29766106 (+) | True | G73169 |
| TU87175 | lncRNA | downstream | 1233 | 30112389 ~ 30112630 (+) | True | G73567 |
| TU87176 | lncRNA | downstream | 6850 | 30118006 ~ 30118492 (+) | True | G73568 |
| TU87179 | lncRNA | downstream | 11867 | 30123023 ~ 30123250 (+) | True | G73571 |
| TU87184 | lncRNA | downstream | 19324 | 30130480 ~ 30130707 (+) | True | G73576 |
| TU87186 | lncRNA | downstream | 23496 | 30134652 ~ 30134865 (+) | True | G73578 |
| XM_026937105.2 | mRNA | upstream | 777 | 30097705 ~ 30109835 (+) | True | keap1a |
| XM_026937116.2 | mRNA | upstream | 60122 | 30045895 ~ 30050490 (+) | True | ebi3 |
| XM_034303701.1 | mRNA | upstream | 88041 | 30014655 ~ 30022571 (+) | True | blvra |
| XM_026936317.2 | mRNA | upstream | 109267 | 29998504 ~ 30001345 (+) | True | rgs13 |
| XM_026936318.2 | mRNA | upstream | 121177 | 29986185 ~ 29989435 (+) | True | rgs1 |
| XM_034303855.1 | mRNA | downstream | 27847 | 30139003 ~ 30194574 (+) | True | zgc:110158 |
| XM_026937319.2 | mRNA | downstream | 88538 | 30199694 ~ 30204010 (+) | True | znf622 |
| XM_026937320.2 | mRNA | downstream | 88538 | 30199694 ~ 30203749 (+) | False | znf622 |
| XM_026936332.2 | mRNA | downstream | 94042 | 30205198 ~ 30211975 (+) | True | d2hgdh |
| XM_026937072.2 | mRNA | downstream | 113887 | 30225043 ~ 30237040 (+) | True | otomp |
| TU86682 | other | upstream | 487575 | 29619993 ~ 29623037 (+) | False | asip2b |
| TU86406 | other | upstream | 1198508 | 28874356 ~ 28912104 (+) | True | G72873 |
| trnat-ugu_8 | other | upstream | 2489229 | 27621311 ~ 27621383 (+) | True | trnat-ugu_8 |
| trnat-ugu_6 | other | upstream | 2489935 | 27620605 ~ 27620677 (+) | True | trnat-ugu_6 |
| XR_003404070.2 | other | upstream | 2552710 | 27557765 ~ 27557902 (+) | True | LOC113540696 |
| TU87615 | other | downstream | 634975 | 30746131 ~ 30767132 (+) | True | G73944 |
| TU87616 | other | downstream | 634975 | 30746131 ~ 30767132 (+) | False | G73944 |
| TU87706 | other | downstream | 950574 | 31061730 ~ 31097888 (+) | False | spsb4a |
| TU87898 | other | downstream | 1240105 | 31351261 ~ 31353144 (+) | False | c4h22orf39 |
| XR_004578111.1 | other | downstream | 1658666 | 31769822 ~ 31776798 (+) | True | LOC113540067 |
