RNA id: TU87175


Basic Information

Item Value
RNA id TU87175
length 242
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G73567
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30112389 ~ 30112630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATGACGCACCGGTGCTTTTTGActgtttatctctctttttctctcgcACGTCCACATCTCTCTGTTCATGATGTGTCATGCCATCAACCTCAGTACTGTCTTAAGTTTAAGCAAAGCAGGTCGTGTCCCTGAACTCTGGAGCATTTAAGCATAATCAGATAATCTGTTTTACACTTAACGTACAATATTGGTACTTCAAAATAGTTGATGTCAGCTCTTGAGAGAAATCCTGCCCCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87146 lncRNA upstream 1233 30110612 ~ 30111156 (+) True G73545
TU87172 lncRNA upstream 27570 30084438 ~ 30084819 (+) True G73564
TU87134 lncRNA upstream 79601 30032310 ~ 30032788 (+) True G73533
TU87101 lncRNA upstream 182221 29929938 ~ 29930168 (+) True G73512
TU86755 lncRNA upstream 318184 29792516 ~ 29794205 (+) True G73185
TU87176 lncRNA downstream 5376 30118006 ~ 30118492 (+) True G73568
TU87179 lncRNA downstream 10393 30123023 ~ 30123250 (+) True G73571
TU87184 lncRNA downstream 17850 30130480 ~ 30130707 (+) True G73576
TU87186 lncRNA downstream 22022 30134652 ~ 30134865 (+) True G73578
TU87200 lncRNA downstream 37825 30150455 ~ 30192334 (+) True G73590
XM_026937105.2 mRNA upstream 2554 30097705 ~ 30109835 (+) True keap1a
XM_026937116.2 mRNA upstream 61899 30045895 ~ 30050490 (+) True ebi3
XM_034303701.1 mRNA upstream 89818 30014655 ~ 30022571 (+) True blvra
XM_026936317.2 mRNA upstream 111044 29998504 ~ 30001345 (+) True rgs13
XM_026936318.2 mRNA upstream 122954 29986185 ~ 29989435 (+) True rgs1
XM_034303855.1 mRNA downstream 26373 30139003 ~ 30194574 (+) True zgc:110158
XM_026937319.2 mRNA downstream 87064 30199694 ~ 30204010 (+) True znf622
XM_026937320.2 mRNA downstream 87064 30199694 ~ 30203749 (+) False znf622
XM_026936332.2 mRNA downstream 92568 30205198 ~ 30211975 (+) True d2hgdh
XM_026937072.2 mRNA downstream 112413 30225043 ~ 30237040 (+) True otomp
TU86682 other upstream 489352 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1200285 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2491006 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2491712 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2554487 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 633501 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 633501 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 949100 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1238631 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1657192 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile