RNA id: TU87186



Basic Information


Item Value
RNA id TU87186
length 214
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G73578
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30134652 ~ 30134865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTCGAAAGTactgtacattatttaaaatttgcacactGTCTTTTAATTGGTTGTCTGTATTTTCTCTTGCATGTTGTACACAGGTAAAACGACCTCCATGAACcccaaaagaaatgtaaaaaaccAATGACCAGTGTGGTGAGTTGTAAAATCATTGTGATGttaaaaccaaataaatgaagaagacaaaaaCCTAACTCTGGTGTTAATGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87184 lncRNA upstream 3945 30130480 ~ 30130707 (+) True G73576
TU87179 lncRNA upstream 11402 30123023 ~ 30123250 (+) True G73571
TU87176 lncRNA upstream 16160 30118006 ~ 30118492 (+) True G73568
TU87175 lncRNA upstream 22022 30112389 ~ 30112630 (+) True G73567
TU87146 lncRNA upstream 23496 30110612 ~ 30111156 (+) True G73545
TU87200 lncRNA downstream 15590 30150455 ~ 30192334 (+) True G73590
TU87379 lncRNA downstream 342560 30477425 ~ 30478250 (+) False uggt1
TU87380 lncRNA downstream 342560 30477425 ~ 30478250 (+) False uggt1
TU87498 lncRNA downstream 346557 30481422 ~ 30481625 (+) True G73839
TU87503 lncRNA downstream 458285 30593150 ~ 30593609 (+) True G73844
XM_026937105.2 mRNA upstream 24817 30097705 ~ 30109835 (+) True keap1a
XM_026937116.2 mRNA upstream 84162 30045895 ~ 30050490 (+) True ebi3
XM_034303701.1 mRNA upstream 112081 30014655 ~ 30022571 (+) True blvra
XM_026936317.2 mRNA upstream 133307 29998504 ~ 30001345 (+) True rgs13
XM_026936318.2 mRNA upstream 145217 29986185 ~ 29989435 (+) True rgs1
XM_034303855.1 mRNA downstream 4138 30139003 ~ 30194574 (+) True zgc:110158
XM_026937319.2 mRNA downstream 64829 30199694 ~ 30204010 (+) True znf622
XM_026937320.2 mRNA downstream 64829 30199694 ~ 30203749 (+) False znf622
XM_026936332.2 mRNA downstream 70333 30205198 ~ 30211975 (+) True d2hgdh
XM_026937072.2 mRNA downstream 90178 30225043 ~ 30237040 (+) True otomp
TU86682 other upstream 511615 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1222548 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2513269 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2513975 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2576750 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 611266 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 611266 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 926865 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1216396 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1634957 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile