RNA id: TU87217


Basic Information

Item Value
RNA id TU87217
length 226
lncRNA type intronic
GC content 0.50
exon number 1
gene id G73607
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29929264 ~ 29929489 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAGATCCTCACTCTGCAGCCAGCCAAGAGGACTCACTCCAACACCTTCTCTTTTAGCCGTATTCCCACTTGATAGCTTTCACTTGTTATGACATCTCTCCAGGTGGCACGGGTCGAGACCACGTGACCACACAGACCCACGTAATCCCTGTTTGTCGACCTTTCTTCAAACTACACTGAAGTGGCAAGGGTACTTAGACAGATTGCAGCTTAAGAGGAAGGTGC

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87081 lncRNA downstream 82373 29846674 ~ 29846891 (-) True G73492
TU87071 lncRNA downstream 135620 29792212 ~ 29793644 (-) True G73485
TU87065 lncRNA downstream 149132 29778555 ~ 29780132 (-) True G73481
TU87028 lncRNA downstream 163149 29765747 ~ 29766115 (-) True G73444
TU87032 lncRNA downstream 163632 29765124 ~ 29765632 (-) True G73448
TU87230 lncRNA upstream 47182 29976671 ~ 30025036 (-) True G73618
TU87275 lncRNA upstream 166301 30095790 ~ 30097973 (-) True G73652
TU87279 lncRNA upstream 171951 30101440 ~ 30102870 (-) True G73656
XR_004578005.1 lncRNA upstream 199239 30128728 ~ 30138872 (-) True LOC113540631
TU87298 lncRNA upstream 257407 30186896 ~ 30191121 (-) True G73670
XM_034303426.1 mRNA downstream 29738 29868591 ~ 29899526 (-) True brinp3b
XM_026936933.2 mRNA downstream 94073 29833662 ~ 29835191 (-) True rgs5b
XM_026937273.2 mRNA downstream 104123 29813527 ~ 29825141 (-) True nos1apb
XM_034304160.1 mRNA downstream 116707 29798170 ~ 29812557 (-) False ddr2b
XM_026937272.2 mRNA downstream 120273 29797070 ~ 29808991 (-) False ddr2b
XM_026936321.2 mRNA upstream 79930 30009419 ~ 30014565 (-) True LOC113540096
XM_034303698.1 mRNA upstream 95580 30025069 ~ 30037066 (-) False wdr48b
XM_034303697.1 mRNA upstream 95580 30025069 ~ 30037064 (-) False wdr48b
XM_034303699.1 mRNA upstream 95580 30025069 ~ 30036526 (-) True wdr48b
XM_026936237.2 mRNA upstream 107919 30037408 ~ 30043011 (-) False LOC113540054
XR_003403975.2 other downstream 198407 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 353537 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 404203 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 404577 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 405352 29523723 ~ 29523912 (-) True LOC113540698
TU87233 other upstream 90017 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 812180 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 843974 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1937593 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1941029 31870518 ~ 31871874 (-) True LOC117597010

Expression Profile