RNA id: TU87230


Basic Information

Item Value
RNA id TU87230
length 2240
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G73618
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29976671 ~ 30025036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acatcagaaaaaaaaaatcttttttttcatttaaagcagATTTTCTTAGTAATTCTGTGAAACTCTGATTCAGGATTTGTCACATGAGCTCAGTTTCAGTGATGAGTCACTGAATAAGCTACGTGGCTTTCGACCAATCACGTcggagattagattagattagatagtGACACCCGGAAACTTCTAGTTAACTTGGCTAATGTTAGTGGTGAACAATTTTGATGTTGAACAAATAAATCTGAGGATATGACGATCAAGACTCGGATATTAAAATCCCAAAAACTCGTGTCTACTCGTGACGAGcgagctagtttactagcagttagctagctgtctcGGTGAAAATTGGGACTTTTCTAAATTCCTAAAttacatatttctgtttattcacAGATCcgggtattttattttatttttttaaataagcgtCAAACATTCAGAAGTTTTTGAGCATTCAAATTGTTCCACATAGATTAATCGAAACAACCTATTATATGTTCAGGggtacttttaaaaaaagttccCACATCCATCACTTCCTTCTTATTCAGGAATAAATAAAGCCAGTGCTGGTGTTGGTGGTGAAAGAGTCGAGGGATGTCCTTTTCGAAGACGTTATCGTAACTTCTTTCGGCGGCTCAGTTTGTAAATAGCTCGCTTTTTAAGTTATTATTCTGGGTTTATGAACAGTATTTTTGTATCATCTAAAAATCTATtgaagagaggaaagaaaaaatctcAAAGGATTTAAAGTTGCAACGTTGTCTCTCCGGTCACGTCACccacaaatgtaaataagaaCAAGCGAACGTTAGCATTTCCACAGATAGGATTTAACCCCTTGAATGCCTAGATTATTATTCAGAGATTCATCTTAAAGATTACAGTAAGTACAGTGAGGATGGCTTCTGGGAGTTTAAAGGGTTAAGGATGTTTTGGAGCTTTTAGCCATTTGGTTTAAATCTTGCTGCCTGGTTCAAATAACATTCATTTGGCCAAAAAGTCAAATGGACACTATTTCTCCTTCATCTTCAATGCAGTCAATCAAGCTAGCTGATATagtttgtacacttttctggccacaagcttcaggatcttgcGGATTTCAATCCGATGGGCTGTTTATACGCACTTCCGCACCTCATAAATTTGTCTCGGATGACTTcttgatttaatatttatttacatttactcttTTTTGCAAAATAGCAGGAAGCTCCTAGATTCATGCATTTGAATACAGAGTGGAACGATGTTATCATCTGGTAAGCCTTGTCGATAAACGTGGCCGAGACCTGACTACTTTCACAGCAAGAGGCCGTTTGATTGACATCAAGAACGACCAATCGCATTAACTTGCTAAAAATCCTCGTATAAATTTTAAAGATGTGAGAGAGAACCTTTATGAATTCAGTGATCTCCTCCTTGTCGCAGTGTAGAGTAGTTTTTTTTCGTTGGAAATCAATGGCTGGAGTTATGTACTCATGGATGCAcatgattctgaagcttgtggccagaaaagtgtacaaaagcaATCAGACACTCCATGAGCCCTGAGCAGAGTGTCTCAGATTATCATCTATTTagctttgaaatgaaaaaaagagattctggttgtccaagatggcctCCCCGATGATCATATTACGACACTTAGCTGcattaagtgtttttttctggattGTGAGCGCATTGTGGCTCtaatctaaaactaaaaaaaagtaaacataacACACCATGGCTGATTGACAACATTTGGGGAAAGTGGAAATTACGCAAATTTGATTTCTCGCcaaattatttgttaaaaatcagGCAAATGATATCCTGCAGAGCTAAACCCTGCTAATTAATCTCTAACTTCCTGTCCATTCCATGAGATGTGTATGAGCAGGAGATGGAACCGTGCTGCACTCTCGCCAGACACTCCAGGACTGGACTTGGGCTCTTCTGCTTGAAGTGAAGGAACgtctataaataaaaagttgaaAACTCACCAATGAGGCTAAATATAAACcatataaatattgtatatgttGTATTATAGCTAGACGGATGTTATGTTATGTATGTGACCTAAATACAGGATCATGATACGGTGcactgactttgtgtgtgtctcagtaatttaaaaaatttatattattctgtattttttttttttctgtatgtccTACAACAGTAtggtgcaataataataataataataataataataataataataataataataatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87217 lncRNA downstream 47182 29929264 ~ 29929489 (-) True G73607
TU87081 lncRNA downstream 129780 29846674 ~ 29846891 (-) True G73492
TU87071 lncRNA downstream 183027 29792212 ~ 29793644 (-) True G73485
TU87065 lncRNA downstream 196539 29778555 ~ 29780132 (-) True G73481
TU87028 lncRNA downstream 210556 29765747 ~ 29766115 (-) True G73444
TU87275 lncRNA upstream 70754 30095790 ~ 30097973 (-) True G73652
TU87279 lncRNA upstream 76404 30101440 ~ 30102870 (-) True G73656
XR_004578005.1 lncRNA upstream 103692 30128728 ~ 30138872 (-) True LOC113540631
TU87298 lncRNA upstream 161860 30186896 ~ 30191121 (-) True G73670
TU87313 lncRNA upstream 170643 30195679 ~ 30197576 (-) True G73684
XM_034303426.1 mRNA downstream 77145 29868591 ~ 29899526 (-) True brinp3b
XM_026936933.2 mRNA downstream 141480 29833662 ~ 29835191 (-) True rgs5b
XM_026937273.2 mRNA downstream 151530 29813527 ~ 29825141 (-) True nos1apb
XM_034304160.1 mRNA downstream 164114 29798170 ~ 29812557 (-) False ddr2b
XM_034304159.1 mRNA downstream 169168 29797070 ~ 29807503 (-) False ddr2b
XM_034303698.1 mRNA upstream 33 30025069 ~ 30037066 (-) False wdr48b
XM_034303697.1 mRNA upstream 33 30025069 ~ 30037064 (-) False wdr48b
XM_034303699.1 mRNA upstream 33 30025069 ~ 30036526 (-) True wdr48b
XM_026936237.2 mRNA upstream 12372 30037408 ~ 30043011 (-) False LOC113540054
XM_026936236.2 mRNA upstream 12372 30037408 ~ 30042993 (-) True LOC113540054
XR_003403975.2 other downstream 245814 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 400944 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 451610 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 451984 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 452759 29523723 ~ 29523912 (-) True LOC113540698
TU87613 other upstream 716633 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 748427 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1842046 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1845482 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1846123 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile