RNA id: TU87298


Basic Information

Item Value
RNA id TU87298
length 4175
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G73670
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30186896 ~ 30191121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGTATAACGCTATTCTCAGCTCCAGAAATGCCGGAGGagaaattttaaacaaagttGCAGTAGACACAGGGGAGATATTATGGCAGTATGATTAATGCCCACATATCCTGCTTGTCCAAATACAACGCCTGGAGCAAAACAGAAGAATATAGTAATTGctcatgaaaaaagaaaaaatcaatatgTTTAGAGAGTTAAATATGTGCTTAGGCGTACTTTTTGTTTCCAGAGGAAAGCATTAACTTGTGTTTAAGTGGAGAGGGACAGAGCTGACACTACAGGTCCACACGGTGGCGTGCGTCCGTTACTTACCACGTAGTTGCCCGGAGATGAGGAGGAGTACGCTATCTGTGAGCggagagaggaaggaaaagcACAGATGAGCtgaaatttttataaataattagacTAAAAACCagaattcacttttatttatttatttatttttaaacagacGTGATTAAATCAATCCCTTCAGCTTTATATTATTAGACTTGATGGAGTGAATCACTTTGAAGTGACTGACTCATTAAGTGAATCACTCTGCTTCACTTGATGACGTGAGTCACTTTGGTTCACTTGATGACGTGAAGCATTTTGTTCCTCTTAAAGACGAGTCACTTGATGACATGACCACCGTAGTTCACCTGATCATGTGAATCACTTTGAATCACTTGATAACgtgaatcattttattttgccTGATGACATGAATCACTTTCGTTTGTTCGATGACACGAGTCACTTTGATTCACTTGACATGAATCACTTTAGTTCGCTTGATGAAGTGAATCACTTTGAACTCTGTTTTATTAGACTTCGTGAAGTGAATCACTGGTATATACGatgaaataaatcactttggTTCACTTGAAGTGAATCACTTTGAACTTCGTTTTACTAGACGAGATGAAGAATCACTTTGAACTTTGTTTTACTAGACTTCATGAAGTGAATCACTTTGGTATACAAGATGAAGTGAATCACTTTGGTTCATTTGAAGTGAATCACTTTGGTATACAAGATGAAGTGAATCATGTTGGTTCATTTGAAGTGAATCACTTTGGTATACAAGATGAAGTGAATCACTTTGGTTCATTTGAAGTGAATCACTGTGGTATACAAGATGAAGTGAGTCTCTGGTTCATTTGAAGTGAACCACTTTAGTATACAATATGAAGTAAACCACTTTAGTTCATTTGAAGTGAAATACTTTAAACTTTGTTTTACTAGACTTCATGAAGTGAATCGCTTTGGTATACAAGATAAAGTGAATCATGTTGGTTCATTTGAAGTGAATCGCTTTGGTATACAAGATGAAGTGAATCTCTGGTTCATTTGAAGTGAATCACTTTAAACTTTGTTTTACTAGACCTGATTACGTCCATCGCTTCGGTTCATTAGACAAAACAAATCGCCTCGAATGATATAAAAGGTGCTGTATAAATACAGATGCACTGTGGGGGGATGGTCAGACTTACCGAGTTAGTGTTGGGATTCGGCCAGGGACCCCGTCCTCCTGGACCCCTGagagaacaaataaacagaTGAGTGGGAGGAGAAAAGGCTAAGTCGACCGACACCATAAACGAGCTTGTCTGACATGTGTTTTGCCCAAAGCGACGACACCGATGACGACGAAGGAGGTTTGCGGTTGCTACTCACATGTTCATTCCTGGCATGCCTGGCCCACCCAGGGAGTTCGGAGGTGGCCTCATTGCACCATAGCTCTACAAAGAGGTGAAAGTTTATCCTTTATCAAGTTACATAAACTGGAATCAATCATTTAGAAAGAAGAGCTGCAATGAATCAAggtacaaatgaataaaagcgTAAAGATACTAGCTTTCATGCTTTGTATCACTTTGGAGTGATGAAGTCAGCCTTGAACTGAAGAGTAATGGGACAGTAGGGTATTTATACACACCTGTGGACCCATGCTGCCCATCCCTCTAGGCGGATTCATTCTCATCGGGCCGCCCATGCTGGGGTGTCCTGAAcgagagggaggaaaagaaaaaaaattcaatccaAGTATGCTTAAACCTGACAAAATGCATCAAACACGTTGATTGTTTTGTGGGTTCTGGCCACGTGTGCGGCTCGTCTAGACTAATACCTTGTGGTCTGGTGGGGTCCAGATTGTTTGGCAAGAGTGGCTGTGACCCAGGAACCCCGACTGGAGGCTGTACAAAGGTGGGGGGGAAATAAGGAACAATGAAAACCAAAAAGTGAAAACATTGGAGCTGTTACGAATTAACGTGAGATCTGCTCCCACTTGTCCGCTTAATCTTACAGTAAGCCGAAATGACTCGTGGTCACATGACACAAGCACAGGATAACTCGTAACTTAAACGTGTACACCGTGTCATACAGCTATCGTGTCATTAAcgaaacaaagaacaacatttAAGCGGTtcctggagggaaaaaaaaaataatccacaacttAAATTTAACCACTATAGAGTGGACCTGCTGCAGAGCTACTGAGACTTTACACTAGAGTTGCGGTCTAATGTGcgtgttaatattaattaataccaTTTCTTTGAATATTTCAGGTAGATTTCGAATTTCGTCTTCGTACTCTTTCATAAACGCAATATTACTGcaatttctttccattttttgaTACTTTAATATTAACGCACTCTCAGGAACGACAAGCTGCACAGCTGTAGCTGTATAGTCTACGATCCGTCACGTCTCGGCCTCAGATGCTCCGCCCACAGGTCACAGAGTGTCTCGTGTAtgttgtacacttttctggccacaagcttcagaatacTGAAGGTTGCAAGCTGACTGACTCGCTTCCTGCAGAACACAATGAGCTTTTTTGGAGCAAGATATTGTGACTGGTCTGAAAATATTCACTGAATACAAGTTATTAAAGAGTTCTGCTTCAAACACACAAGATAATCTTGAGAAAACGGCTTTCTTTGGTCGTCTGCCACGCCAGTCAAATTGGCTTTTCTGTGAAAGTGGGTCATTCTTGGCAACGTTTACTGACAAAATCTATCAGACTCTCCGCTGATGCTTGAGGTCTGGCTTGCAATATGAGGATGTAACAAACATGTCGAGCAAGACGGACTTTGATTTTACGAAGCTAAAAATGTTGAGAGCTTTTTTATATCTATTGCATCTACTGTACAAGGCATTTGTAAATTAAGCGCTAAGTCtgtattattttcctttctgaAAGCGAAATGACTTTTCCAGAGGAAATAATTTAGGGCTAATGGCATACAGACACCACAAAAGCCTAAGGAAAGCACGAGTACCAGGATGCGTACATGCGTAGTTGAGTAACTGCTTAATTGTTTGAGGCGTCGGTATTCCGTGTACTGAAATCAGCGCTCGGTTTCACGcaagaaaatatataaacaaaaagctGTGTATGGCAAGATCAGGATGCAGAGATCAGCACTATCATAGTGCGCATGTTAGAGGTGTGTATCCGGATGTTTCTACTCTCGAGGACGGCGTGATATGAAGGTCTTAGGACAAAAGAGAGATTAATACCAATACCAATTTCCAATAATGTTCAGTACAACTCCATTAACACTCTACAATAGAGACAAATCAGGAACTTTGGGCTTTGCACGGATTTAAGCCTATGTGGCACCAAAATGCAACACTTTTCCTTTCATACTGGCCGCTGCTCTCACGTAGAGCACTTATTTCACTGTTTAGGAAACGTGGAAATATCTGTACTGTCAGATTACCTGTCAATTATTCacaaagtttgaattttaaccaATGACAGGTTGAAATATTGAGCTGACATTCAGCAAGACTGACATCGTGTAAAGCTTTTGCTGGCCGTTTAATActtttgttcattatttctctatatTACGTCTGTCAAacgcataaaaacaaaaacctgccaAGCTACTGACAAGAAGGTTGAACTGAAATGACAAATAAAGacactttattatattacagtGAAGACTTGAAGAATTTTAGCAGTTAACTGATTATCAGTTCGTTAACTCTTactgatataataatattgttctCGTATTTGAAAGTTGGACAAAACTACGTAAACAGCATTTTCGTCACCTTCATCGTTTGAGTACGTTAGCTGCAAACGTTTATTGGTGGAACGTGACACTTTCCCTTGGGCATCCATTATAAGtgaattttcttattttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578005.1 lncRNA downstream 48024 30128728 ~ 30138872 (-) True LOC113540631
TU87279 lncRNA downstream 84026 30101440 ~ 30102870 (-) True G73656
TU87275 lncRNA downstream 88923 30095790 ~ 30097973 (-) True G73652
TU87230 lncRNA downstream 161860 29976671 ~ 30025036 (-) True G73618
TU87217 lncRNA downstream 257407 29929264 ~ 29929489 (-) True G73607
TU87313 lncRNA upstream 4558 30195679 ~ 30197576 (-) True G73684
TU87486 lncRNA upstream 286282 30477403 ~ 30478234 (-) False G73834
TU87487 lncRNA upstream 286282 30477403 ~ 30478234 (-) False G73834
TU87488 lncRNA upstream 286282 30477403 ~ 30478234 (-) False G73834
TU87489 lncRNA upstream 286282 30477403 ~ 30478234 (-) True G73834
XM_034303327.1 mRNA downstream 102035 30064050 ~ 30084861 (-) True crlf1a
XM_034303448.1 mRNA downstream 130176 30050560 ~ 30056720 (-) True odf3l2a
XM_026937101.2 mRNA downstream 130488 30050560 ~ 30056408 (-) False odf3l2a
XM_026936237.2 mRNA downstream 143885 30037408 ~ 30043011 (-) False LOC113540054
XM_026936328.2 mRNA upstream 21268 30212389 ~ 30223320 (-) False acvr1l
XM_026936330.2 mRNA upstream 21268 30212389 ~ 30223163 (-) True acvr1l
XM_034303540.1 mRNA upstream 21268 30212389 ~ 30222759 (-) False acvr1l
XM_026936331.2 mRNA upstream 24542 30215663 ~ 30223320 (-) False acvr1l
XM_034303822.1 mRNA upstream 402585 30593706 ~ 30701045 (-) True epha4b
TU87233 other downstream 164371 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 456039 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 611169 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 661835 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 662209 29524509 ~ 29524687 (-) True LOC113540697
TU87613 other upstream 550548 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 582342 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1675961 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1679397 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1680038 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile