RNA id: TU87313


Basic Information

Item Value
RNA id TU87313
length 1838
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G73684
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30195679 ~ 30197576 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAATGCAACTTGTTTAATGAACAAAAAGCAGGCGAAGCAGGAGGCCTTGGTAAAAGGGATTACGTTATTTTTATTAGTCTTAAATTTGTATCTACAACGAAGGGACACGAGCAAAAATAAGTGACGActccatggaaaaaaaagaaaagaattacatttattatcgatgcattttttttccatttttttaggTAAacgactttttttgtttgtttttttttttttccttttcagtctAAAGAAATTTTTACAATAGAAAGAAACATTAACTACACGAGACACAGAAAAAAGTCCCTAGAAGACAAGGAGCCAGTCTAGTCTAACGTGAAATCCAAAGCAAAATCGAAGGAGGTCGCTGCTCCATACTCAATACTGCTTGTTCCGTTTCTCGGAAAAAGACCCGAGGAACGACGAAGCTCCCTTCCGTTTCTCCTTAATGTTACATTATTATACAGCGTCACAACAGTAGTACAGAAATGGCCGATGGGACAGACTTTTGTATGGCAAACAGGGCGAAGACACTGGCTGAATCCCAAACTGCTCCCTACTCCCTAGGTAAGTGCACTACAGGGGGGTAGAAAATGTTCATCACACCCCGAGTAGCGTCCAATTTGGGATTTGACGCTAGAAAATATCTCAGAACGCAGAGGAAATGcctcctccctttttttttttaatcacttcttttaatttttttttttttttttaattttttattttaaatagataaaaatcCTTCATCACAAAGTCTGTTTGTATCTCTGATCCCTTTAAGTTTCTGATTTGAGCCTTGAAACACGTTCATTTTTCTGGAAAAGTGCACAAGCGTGGCcgccctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgggaCGTGAGAGCCAAAAAGAAGGGATCCTGAGCACTTGGTCAAGGCTGAAACAGGAGTGTGTTAGGACTGCTACAGAACTGCCTCTCATCATTCACCTTATCTGTGGATTAATCAGTGCAATAGGACAAGTTCTTCTCCTTTTCACTGATTGcgtagaagttttttttttctccagtggGAACAGAGCTTCAGCTAGAAAGGTTGTTTTctttacaccttttttttttttttttccctccagtgCTGTGTTCATTTGTCGAGACTGGAATATCAAAAAACATGTCAATGATatcaaaatgcattttacagtatttacaggaAGCAAATGataaagaaaggagaaaaaaaaaaagagtgacgTCATGTACAAGGCGGTCTGATTAGAGTGTGGGAGGCAGGTTAGCATTTGGATACccattaattaacaaattaaatagCAGTGGCTGATTTGAAACAACCAGAATGGATCCCGAAACagttaaacaaatattaaaaaaaaaaaaagaaagagaaaagaaataaaatcagacGGGaaagggggaagaaaaaaacaaaaaacaaaacataaaacattgaCAAATCCTGCTCTGTACGCTGCTATGGGAGTTAAAGATGGACCTCTGTGTTGTAGGACTCCGTCTTTAGGTGTTAATGATCATGTGACGTGAAGCTCCGTGAGTTGCTCGGCGGCGGTAACTAGGTAGTCTTGATTCGTTTCCGAAAAGCCAGACAAGCAGCGGTGGCTCGTGATTCGAGCGGGTCGGGACGACGCTCGAGTTTTTCCCTCCACTCATCCTGGTGCACGTTACGTGGGAACAGATGCAGACGTGGTACCTCACATCACCCAGTGTGCTGAAGAAGAAACGTGTCTGAGAAGCCGAGGAGCTGCTACGCCTTTTCAGTCAGTCCGTCGGATACGAGAAAGCACGTGAGCGCGTCTCGGCGG

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87298 lncRNA downstream 4558 30186896 ~ 30191121 (-) True G73670
XR_004578005.1 lncRNA downstream 56807 30128728 ~ 30138872 (-) True LOC113540631
TU87279 lncRNA downstream 92809 30101440 ~ 30102870 (-) True G73656
TU87275 lncRNA downstream 97706 30095790 ~ 30097973 (-) True G73652
TU87230 lncRNA downstream 170643 29976671 ~ 30025036 (-) True G73618
TU87486 lncRNA upstream 279827 30477403 ~ 30478234 (-) False G73834
TU87487 lncRNA upstream 279827 30477403 ~ 30478234 (-) False G73834
TU87488 lncRNA upstream 279827 30477403 ~ 30478234 (-) False G73834
TU87489 lncRNA upstream 279827 30477403 ~ 30478234 (-) True G73834
TU87490 lncRNA upstream 279827 30477403 ~ 30478234 (-) False G73834
XM_034303327.1 mRNA downstream 110818 30064050 ~ 30084861 (-) True crlf1a
XM_034303448.1 mRNA downstream 138959 30050560 ~ 30056720 (-) True odf3l2a
XM_026937101.2 mRNA downstream 139271 30050560 ~ 30056408 (-) False odf3l2a
XM_026936237.2 mRNA downstream 152668 30037408 ~ 30043011 (-) False LOC113540054
XM_026936328.2 mRNA upstream 14813 30212389 ~ 30223320 (-) False acvr1l
XM_026936330.2 mRNA upstream 14813 30212389 ~ 30223163 (-) True acvr1l
XM_034303540.1 mRNA upstream 14813 30212389 ~ 30222759 (-) False acvr1l
XM_026936331.2 mRNA upstream 18087 30215663 ~ 30223320 (-) False acvr1l
XM_034303822.1 mRNA upstream 396130 30593706 ~ 30701045 (-) True epha4b
TU87233 other downstream 173154 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 464822 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 619952 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 670618 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 670992 29524509 ~ 29524687 (-) True LOC113540697
TU87613 other upstream 544093 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 575887 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1669506 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1672942 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1673583 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU195117 True 1335 TUCP 0.41 3 CI01000034 1864118 ~ 1866373 (-)
rainbow trout (Oncorhynchus mykiss) TU188139 True 1415 lncRNA 0.40 2 NC_048566.1 58929776 ~ 58933587 (-)
rainbow trout (Oncorhynchus mykiss) TU2525080 True 3702 lncRNA 0.40 3 NC_050570.1 17616364 ~ 17620151 (+)
bowfin (Amia calva) TU195117 True 3755 lncRNA 0.42 2 CM030142.1 11609836 ~ 11613611 (-)
mexican tetra (Astyanax mexicanus) TU188139 False 1608 lncRNA 0.39 1 NC_035912.1 5005399 ~ 5007006 (+)