RNA id: TU87379



Basic Information


Item Value
RNA id TU87379
length 780
lncRNA type sense_over
GC content 0.40
exon number 2
gene id uggt1
representative False

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30454757 ~ 30478293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aaaaaaaaaaagctattctCCTGGAGCGGGGTCCACGTTGGCGCTGTGAAAACTTGAATGGAAATGATTCAACCTCTCTCATTTGTGTATGCATGGGGCGTGTGGCAGGACTCGGAGGAAACAGACGAAGAGCAGATCACGTAGGTTTACTTTGGAATTGTGGGAAATCGTATATGAGGCATAGTCATGGCTGGGTCTGAAGCGCTATTAACAAATATCATTGCCTTTCCTGTGAGTCCGACCAGCACCTGCccaagtgtgtgtaagtgtgtgtaagtgtgtgtaagtgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcattctgaCTGCAGTACCTGTTAAGTCAGTGCTCTAAAGGtgaaacatccatccatctggtGAGTGAGAAAATCATGACGTTATCAAATGATGTGCTGAAGTGAGAAAACGGTAACgcgcatttctttttttttcatcgttCAATAGGAAAGGCTAATTTATTCAACTATTGTGCTGACGAAAATACTCTTCAGTTGCTGTTTTGCGTGATTCCTAAACAGTCTTTTATAATTCCCACCTGTTTCAAGTGTAATAAGggttaatataaacatatcgTAAAAGTGCTTTTGCCCCACATCTGATTAGATTGAagaaatttcattttgtttttgaactgcacctgagttttttttttttttctcttctctgcaTCTACTGTATCGTTTTTAATCAATCCGAGAACGCAAAGGACATTCACATTAATTTGTTGTTGGGATAATGTAGGATTAATTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87200 lncRNA upstream 285091 30150455 ~ 30192334 (+) True G73590
TU87186 lncRNA upstream 342560 30134652 ~ 30134865 (+) True G73578
TU87184 lncRNA upstream 346718 30130480 ~ 30130707 (+) True G73576
TU87179 lncRNA upstream 354175 30123023 ~ 30123250 (+) True G73571
TU87176 lncRNA upstream 358933 30118006 ~ 30118492 (+) True G73568
TU87498 lncRNA downstream 3172 30481422 ~ 30481625 (+) True G73839
TU87503 lncRNA downstream 114900 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA downstream 114984 30593234 ~ 30593609 (+) False G73844
TU87604 lncRNA downstream 242781 30721031 ~ 30722802 (+) True G73935
TU87625 lncRNA downstream 294352 30772602 ~ 30772886 (+) True G73952
XM_026937167.2 mRNA upstream 29793 30338870 ~ 30447632 (+) True hs6st1a
XM_026937072.2 mRNA upstream 240385 30225043 ~ 30237040 (+) True otomp
XM_026936332.2 mRNA upstream 265450 30205198 ~ 30211975 (+) True d2hgdh
XM_026937319.2 mRNA upstream 273415 30199694 ~ 30204010 (+) True znf622
XM_026937320.2 mRNA upstream 273676 30199694 ~ 30203749 (+) False znf622
XM_026936553.2 mRNA downstream 302908 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA downstream 302908 30781158 ~ 30845103 (+) False epha4a
XM_026936633.2 mRNA downstream 527173 31005423 ~ 31028876 (+) True slc25a36a
XM_026936134.2 mRNA downstream 583487 31061737 ~ 31097929 (+) True spsb4a
XM_026937114.2 mRNA downstream 651857 31130107 ~ 31212333 (+) False clstn2
TU86682 other upstream 854388 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1565321 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2856042 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2856748 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2919523 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 267881 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 267881 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 583480 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 873011 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1291572 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile