RNA id: XM_034303971.1


Basic Information

Item Value
RNA id XM_034303971.1
length 5658
RNA type mRNA
GC content 0.51
exon number 40
gene id uggt1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30454757 ~ 30478293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taTACAAGCCGCCATTTTACACTCTATGTAGTGGACTCGTTGAGGAAGTAAGGCGCTATTTGGGATTGAACCATGGCTGCTCCAGCAGGAAGTTCAGAAGCCGGTGGAGGCTATAAGATGAGGATGCTTTGGGCGTTCCTGGTGGCTTTGCACTTCGTGTCCTGTGTCCACGGCGACTCGAAGGCTGTGACCACGACGCTTACCACCAAATGGCCCTCTACACCTTTGCTCCTGGAGGCCAGCGAGTTTCTTGCCGAGGAGAGCCAGGAAAAGTTCTGGGACTTCGTGGAGGCTAACCAAGATATTGAAAATGACCATGATGGCACAGATCTGTCGTATTACGAGCTGATCATGAAGCGAGCTGGCCAGCTCTTGAGCCCCGTGCAGTTGAAGCTGCTGAAGTTTGCGCTCTCTTTACGCTCCTACTCCTCTACGGTTTATTCATTCCAGCAGATTGCATCCAATGAACCTCCTCCACGAGGCTGCAAGGCATTTTTCAGCGTCCACGGACAGAAATCATGTGATCTGGACCATCTGAAGAACCTGATTGACGCTGCTTCAGAGAGGCCGAAGCCGTTCCTGTTTAAAGGCGATCACAGGTTTTCCTCGGCTGACCCGGACGCTCCCGTTGTCATCCTCTATGCCGAGTTGGGAACCAAAGAGTTCGCTAGATTCCATCAGCACATGCTGGCCAAAGCCAAGAAGGGCCTGATTAACTACGTCCTGCGCCATTACCTCTCAAAACCCAGCGATGATAAAGTTTTCCTGTCTGGTTACGGGGTTGAATTGGCCATTAAAAACCAGGAATATAAAGCCAAGGATGACACACAAGTTCAAGGTGCTGACGTGAACGCCACAGTGATCGGCGAAAACGACCCAGTGGACGAAGTGCAGGGCTTCCTGTTCGGCAAACTCAAaacAATCTACCCAGAGCTGAAGGAACAGCTGAAGGAACTGCGTAAACACCTGGTCGAGAGTACGAACGAGATGGCACCGCTCAAAGTCTGGCAGATGCAAGATCTCAGCTTCCAGACAGCAGCCCGTATCCTGGCAGCCCCTCCTGTAGACGCTCTTAACGTAATGAGAGACCTGAGCCAGAACTTTCCTACAAAAGCGAGGTCCATAACTAAAACGGCGGTAAACTCAGAAATCCGTAAGGAGATCGAAGAGAATCAGAAGTACTTTAAGGGCTCATTGGGACTGCAGCCAGGCGATTCAGCTCTCTTCATTAACGGACTCCACATTGATCTGGACGGCCAGGACATCTTCAGCGTGTTTGATGTGCTGAGGAGCGAAGCTCGTGTCATGGAGGGCCTCCGTAGCCTCCTCATCGACTCGCCCTTCATCCACGACATCCTCAAACTGAACGTTCAGCCGTCCGACTCGGATTACGCCGTGGACATCCGCAGTCCTGCCGTCTACTGGATCAATAACCTGGAGACGGACGGCAGGTACGCCTCGTGGCCCTCGACCGTGCAGGAGCTCCTGCGTCCCACTTTCCCAGGAGTCATCAGACAGATTCGCAAGAATTTCCACAACCTGGTAATGATCTTGGATCCCACTCATGAGAGCACGGCAGAGCTACTGAGCGTCGCAGAGATGTTCTACGCCAATAACATCCCCCTCAGGATAGGACTGGTGTTTGTGGTGAACGACGGCGACGATGTCGACGGCATGCAGGACGCTGGCGTCGCTATGCTACGAGCTTTCAACTACATCGCAGAAGAAGTGGACAATCAGTTGGCCTTCGATGCCATCGTATCAatgCTGAACCGCGTGCCCAGTGGAGGGAAGCTGAAGGTGGAGGACGTGGTGGCAGTTCTGGAGAAACGTTATCCCTATGTGGAAGTAAGAAGCATCCTGGGAGCAGATTCAGTCTACGACAAAAATCGCAAGGAAGGGAAGGCGTATCACGAGCAGACGGGAGTGGGTCCTCTACCCGTGGTCCTGTATAACGGCATGCCTCTGCAGCGCGAGCAGCTCGACCCCGATGAACTCGAGACCACCGTCATGCACAAGATCCTGGACACCACCAGTTTCTTCCAGCGCGCCGTCTATTTGGGTGAGCTGGCGAGCGACCACGACGTAGTGGACTTCATCATGAACCAGCCGAACGTGGTGCCGCGCATCAACTCGCGCATCCTGACCACCACCAGGAGCTACCTGGATCTCTCCAGCACCAATAACCATTTCATCGACGATTATGCCCGGTTCCTCTTCCTGGACACTAAAGAGAAGAACACGGCCGTGGCTAACAGCATGAACTACATGACAAAGAAAGACGATGGCGTGATCCGTCCCGTGACATTCTGGGTGGTTGGAGATTTTGACCAGCCAGCAGGCAGACAGCTGCTGTACGACGCCATTAGACACATGAAAACCAGTAATAACGTGCGCTTGGGGATGATCAATAACCCAGCGGACAGCCCCTCGAACGCGACCACGCTGATCGCCCGGGCCATCTGGGCAGCCATGCAGACTCAAACGGCCAACAACGCCAAGAACTTCATCACCAAAATGGTCAAAGAGGAGACGGCAGATGCGCTGTATTCCGGGAAAAACATCGCCGACTTTGCAGTCGGGGGCATGGACGTACCTCTGTTCAAGGAGGCCTATGAATCTCCTAAAGTGGACTTCCTCTTGGCCCAAGCCGCTTATTGCCGCGACGTCCTGAAGCTGCGTAAAGGCCAGAGGGCCGTCATCAGTAACGGACGGGTTATCGGCCCGCTCGAGGAGGGGGAGGTCTTTAACCAGGACGACTTCCTGCTTCTGGAGAGCATCATCCTGAAAACATCTGGAGAGCGAATCAAGAACAAAATCCTGCAGCTGGCCATCGAAGAAGATCGAGCAAGCGATTTGGTCATGAAGGTGGACGCTCTGCTGTCGTCGCAGCCCAAAGGCGAGGCCCGGGTTGAGTACGGCTTCATAATGGAGAGACACAGTGCTGTAAAAATCCGCCCCAAGGAGGAGGAAGTGTACTTTGACATCGTGGCTGTGGTGGATCCCGTCACCAGAGATGCTCAGAAACTGGCTCCTCTTCTCTTGGTCTTGAAACAACTGGTCAACGTTAACCTGCGAGTCTTCATGAACTGCCAGTCCAAGCTCTCTGACATGCCGCTTAAAAGTTTCTACCGATACGTGCTGGAGCCCGAGGTGACCTTTCTGGCCGATAACAGCTTCGCTCTGGGTCCGATGGCTAAGTTCCTGGACATGCCCCAGTCTCCACTATTCACCCTGAACCTGAACACCCCCGAGAGCTGGATGGTAGAGTCTGTGCGAACACGTCACGACCTGGACAACATCTACCTACAGGAGGTGGACAGTATTGTAGCTGCAGAGTACGAGCTGGAGCACCTGCTGCTGGAAGGTCACTGTTTCGACGTGAGCACTGGTCAGCCACCTCGCGGGCTCCAGTTCACCCTGGGAACAGCCTCAGACCCCGTCATAGTGGACACCATCGTCATGGCCAATCTGGGCTACTTCCAACTCAAAGCAAACCCAGGAGCCTGGATCCTGAGGCTGAGAAAAGGAAGATCGGATGATATCTACAAGATCTACagTCATGACGGTACAGACTCTCCGGCCGACGCCGAGGACTTAATAGTCGTGCTGAACAACTTCAAGAGCAAGATCATTAAAGTGAAGGTGCAGAAGAAGCCCGACATGATGAATGAGGAGCTCCTCAGTGACGGCAGCAGCGAGAACGACTCCGGATTCTGGCAGTCCCTAACCAGAGGATTCACCGGTGGCCAGAAAGTGGAGGAAACCAAGCAGGAGAAAGACGACGTCATCAATATTTTCTCTGTGGCCTCAGGACACTTGTACGAGAGGTTCCTGAGaataatgATGCTGTCTGTGCTGAAACACACTAAGACGCCGGTGAAGTTCTGGTTTCTGAAGAACTATCTGTCTCCAACCTTTAAGGAGTTTATCCCGTACATGGCTCGGGAATATGGCTTTCAGTACGAGTTGGTGCAGTATAAGTGGCCTCGCTGGCTCCATCAGCAAACCGAGAAGCAGCGCATCATCTGGGGCTACAAGATCCTCTTCCTAGACGTGCTCTTCCCGCTCGCCGTGGATAAAATCCTCTTCGTGGATGCTGACCAGATCGTGCGCACAGATCTAAAGGAGCTGCGCGACCTGGACCTGGAGGGGGCGCCATACGGTTACACGCCGTTCTGCGAGAGCCGCAGGGAGATGGACGGCTACCGTTTCTGGAAATCGGGCTACTGGGCCAGCCACCTGGGGCCTCGCAAGTACCACATCAGCGCACTGTACGTGGTGGATCTGAAGAAGTTCAGGAAGATCGCTGCAGGAGACCGACTGCGAGGACAGTACCAAGGACTGAGCCAGGATCCCAACAGCCTGTCCAACCTcgatcagGATCTGCCGAACAACATGATCCATCAAGTGCCCATCAAATCTCTGCCTCAGGAGTGGCTGTGGTGTGAGACGTGGTGCGACGACGCCTCCAAAGCCAAGGCCAAGACCATTGACCTGTGCAACAACCCTCAGACTAAAGAGCCGAAACTCCAGGCAGCCGTCCGGATCGTGGCTGAATGGACAGATTACGATCAGGAGATCAAGAGAATTTATAACAAGTTCCTAGAAGGACGAGAGAGAGGAGCTCACTCAGGGGAAAAGCACACgcaggagagaaagacagatGGACAGAAGCACATAGAGCTGTAGACGGACTGCTTTCCACACAGGGAAGACTGACTCTGTTTAAagagttgtcttttttttttttttttccttcttctttctcaattttccttttaaaaaaaaaaaaaaaaagctattctCCTGGAGCGGGGTCCACGTTGGCGCTGTGAAAACTTGAATGGAAATGATTCAACCTCTCTCATTTGTGTATGCATGGGGCGTGTGGCAGGACTCGGAGGAAACAGACGAAGAGCAGATCACGTAGGTTTACTTTGGAATTGTGGGAAATCGTATATGAGGCATAGTCATGGCTGGGTCTGAAGCGCTATTAACAAATATCATTGCCTTTCCTGTGAGTCCGACCAGCACCTGCccaagtgtgtgtaagtgtgtgtaagtgtgtgtaagtgtgtgtaagtgtgtaagtgtgtgtaagtgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcattctgaCTGCAGTACCTGTTAAGTCAGTGCTCTAAAGGtgaaacatccatccatctggtGAGTGAGAAAATCATGACGTTATCAAATGATGTGCTGAAGTGAGAAAACGGTAACgcgcatttctttttttttcatcgttCAATAGGAAAGGCTAATTTATTCAACTATTGTGCTGACGAAAATACTCTTCAGTTGCTGTTTTGCGTGATTCCTAAACAGTCTTTTATAATTCCCACCTGTTTCAAGTGTAATAAGggttaatataaacatatcgTAAAAGTGCTTTTGCCCCACATCTGATTAGATTGAagaaatttcattttgtttttgaactgcacctgagttttttttttttttctcttctctgcaTCTACTGTATCGTTTTTAATCAATCCGAGAACGCAAAGGACATTCACATTAATTTGTTGTTGGGATAATGTAGGATTAATTGTGGGATgtcagttattttttaataaaaaaagatgtaatAAATTCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0003980 UDP-glucose molecular_function

KEGG:

id description
K11718 HUGT; UDP-glucose:glycoprotein glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87200 lncRNA upstream 262423 30150455 ~ 30192334 (+) True G73590
TU87186 lncRNA upstream 319892 30134652 ~ 30134865 (+) True G73578
TU87184 lncRNA upstream 324050 30130480 ~ 30130707 (+) True G73576
TU87179 lncRNA upstream 331507 30123023 ~ 30123250 (+) True G73571
TU87176 lncRNA upstream 336265 30118006 ~ 30118492 (+) True G73568
TU87498 lncRNA downstream 3129 30481422 ~ 30481625 (+) True G73839
TU87503 lncRNA downstream 114857 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA downstream 114941 30593234 ~ 30593609 (+) False G73844
TU87604 lncRNA downstream 242738 30721031 ~ 30722802 (+) True G73935
TU87625 lncRNA downstream 294309 30772602 ~ 30772886 (+) True G73952
XM_026937167.2 mRNA upstream 7125 30338870 ~ 30447632 (+) True hs6st1a
XM_026937072.2 mRNA upstream 217717 30225043 ~ 30237040 (+) True otomp
XM_026936332.2 mRNA upstream 242782 30205198 ~ 30211975 (+) True d2hgdh
XM_026937319.2 mRNA upstream 250747 30199694 ~ 30204010 (+) True znf622
XM_026937320.2 mRNA upstream 251008 30199694 ~ 30203749 (+) False znf622
XM_026936553.2 mRNA downstream 302865 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA downstream 302865 30781158 ~ 30845103 (+) False epha4a
XM_026936633.2 mRNA downstream 527130 31005423 ~ 31028876 (+) True slc25a36a
XM_026936134.2 mRNA downstream 583444 31061737 ~ 31097929 (+) True spsb4a
XM_026937114.2 mRNA downstream 651814 31130107 ~ 31212333 (+) False clstn2
TU86682 other upstream 831720 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1542653 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2833374 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2834080 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2896855 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 267838 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 267838 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 583437 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 872968 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1291529 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile