RNA id: TU87504


Basic Information

Item Value
RNA id TU87504
length 376
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G73844
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30593150 ~ 30593609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTATTACAGCAACATGAAAAGTGTACACTCTTGCAGTGGGCTGAATAGAAACCTGCAGTGACTAAAAGACATCGGGCACGGCTTAAATAGATGACCTGTCAGAAATAACCAGTAATAAGGAGTCAAAGAAATCTACACATCCTGCATTAGAGTCACTTCATGGACAATTTTTGAAAAACATCTTTAGCCTAGCTACATCACAATTACCATTTTTTATTATCTTGCAACAAATATGCTTGAGACAAACATTCATTTCAGacccttttttgtgtgttagtCCTTGAAGATTTCGACTACTGTAAGCTTTAGATTCATGTCTTCTTGATTCACGTTCCTTGCTTtaagacacacaaacatgcttTTTTCGGATCat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87498 lncRNA upstream 111609 30481422 ~ 30481625 (+) True G73839
TU87379 lncRNA upstream 114984 30477425 ~ 30478250 (+) False uggt1
TU87380 lncRNA upstream 114984 30477425 ~ 30478250 (+) False uggt1
TU87200 lncRNA upstream 400900 30150455 ~ 30192334 (+) True G73590
TU87186 lncRNA upstream 458369 30134652 ~ 30134865 (+) True G73578
TU87604 lncRNA downstream 127422 30721031 ~ 30722802 (+) True G73935
TU87625 lncRNA downstream 178993 30772602 ~ 30772886 (+) True G73952
TU87694 lncRNA downstream 424502 31018111 ~ 31018474 (+) True G74011
TU87688 lncRNA downstream 436779 31030388 ~ 31031370 (+) True G74006
TU87857 lncRNA downstream 653481 31247090 ~ 31250757 (+) True G74158
XM_034303971.1 mRNA upstream 114941 30454757 ~ 30478293 (+) True uggt1
XM_026937167.2 mRNA upstream 145602 30338870 ~ 30447632 (+) True hs6st1a
XM_026937072.2 mRNA upstream 356194 30225043 ~ 30237040 (+) True otomp
XM_026936332.2 mRNA upstream 381259 30205198 ~ 30211975 (+) True d2hgdh
XM_026937320.2 mRNA upstream 389485 30199694 ~ 30203749 (+) False znf622
XM_026936553.2 mRNA downstream 187549 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA downstream 187549 30781158 ~ 30845103 (+) False epha4a
XM_026936633.2 mRNA downstream 411814 31005423 ~ 31028876 (+) True slc25a36a
XM_026936134.2 mRNA downstream 468128 31061737 ~ 31097929 (+) True spsb4a
XM_026937114.2 mRNA downstream 536498 31130107 ~ 31212333 (+) False clstn2
TU86682 other upstream 970197 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1681130 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2971851 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2972557 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 3035332 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 152522 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 152522 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 468121 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 757652 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1176213 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile