RNA id: TU87604


Basic Information

Item Value
RNA id TU87604
length 1553
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G73935
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30721031 ~ 30722802 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctaaatagtaaaaaataataataataataataataataatgcgtAGCATAAAATTCTATTGATCTACATTATAACGCATATTTGTGATTATGTACAGTTCAGTTACACTTAAAGATCTTCATGGATCTATGATTATTTATGGTTACAATTTGTTGGCATCTCTGTAATGGCACCCATTGAGTGGTGGAATCCATTTCCCCTGGCTGGATTCACTAAGCACTTACatgagaacaaaacaaaaggaaaaaaaaggaaagtaaaaTTCAcccctactactactacctcCTCTTGAACATGGTTTTAGCTTGTATTCTTCAACCCTGACCTTGGAGTCTACAAAGCATTTCTTTAAGTCGCTATGGATAATGATCTCTGccaataaatgtaaacataaatttaaatgtaaatctgcAAATCTGTACAGTTCACCCATGGATTGATCAGAAACCTAGCATGAGCATCATTGCGCAATACTCATCATGCCCATGTCAGTGTGTCAAAAGTCTTAAAAGTCCTAGTGGCACTGATCTGACATCGAATGAGTCAACATGGAAAGAAAGTGCACAGACGAAATTGGGTGAAGAATAACCGCAAGACTTTTCTCACAATGTTCTGCGGTCATCTCCAAGGGCATAAGATTCTTAACCTTTAACCTTACAGTCTCAAAAAGATCTCAGAACCAAACTGGTCAACGTTCTACACATTCTTTGTCACTCCTGGAGTTCATCTGTGCTCTCCTTAGTCCCttcttacttttctttttcaaacgTCTGACTGTCCATGGAATTTTCTTCTTTCCTGAGGTGCTGCTGGACTCTCCCTTGAGCTTGTCTTGCTCGGAGATCACGATTGGTGGGCAGCGTGTTATCCGTGGTTTAATTTTCGGTGTGGATGGTTTCTGGACTGGTCTTTCCTTGGTTGATGTTCCTTTAGTTGTTGTCGTGGTCATAGTCATCTTTGTTGTCGGAATTTGCGTTGTTGTCCACTGAGGTGGCTTGTGGGTATTCCTAAGCGGTCCTTTAGTTGAAGATCTATGAGTGATGTATGTTCTTGGTTTCCATGTGGTTGATGGTCCTTTAGGTGTTGTTGTCCTCACTGGGATTTCTGTCGTCATGGTCATTGAAGTCGTCTTGATATCAGTTGTCAATGGCTTCCTATCCGTAATAGTAGTCATCTTTGTTGTTGGAATTTGCGTTGTTGTCCACTGAGGTGGCTTGTGGGTATTCCTAAGCGGTCCTTTAGTCGAAGATCTATGAGTGATGTATGTTCTTGGTTTCCATGTGGTCGATGTTCCTTTAGGTGTCGTCATGGTTATTGTGCTTTCTGTATTTGTTCCTGGTGAAGATGTGCTTGTAGTCCATGATTTTGGGGTAGTGGGTACTTTTATGGTTGTTCTTTTACGCAGCTTCTCTATGGCATGTTTGGCCCAAGCGTCCTTTGGATCAGAGCATATTGTTTTGCCGTTTACCAATAGGAACCTGtgaaatgacattttcagtAGTTAGTGATTGCATTTTATGGAAAGTGTTGCAAATTTCCTCATACCATTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87503 lncRNA upstream 127422 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA upstream 127422 30593234 ~ 30593609 (+) False G73844
TU87498 lncRNA upstream 239406 30481422 ~ 30481625 (+) True G73839
TU87379 lncRNA upstream 242781 30477425 ~ 30478250 (+) False uggt1
TU87380 lncRNA upstream 242781 30477425 ~ 30478250 (+) False uggt1
TU87625 lncRNA downstream 49800 30772602 ~ 30772886 (+) True G73952
TU87694 lncRNA downstream 295309 31018111 ~ 31018474 (+) True G74011
TU87688 lncRNA downstream 307586 31030388 ~ 31031370 (+) True G74006
TU87857 lncRNA downstream 524288 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 632752 31355554 ~ 31356121 (+) True G74199
XM_034303971.1 mRNA upstream 242738 30454757 ~ 30478293 (+) True uggt1
XM_026937167.2 mRNA upstream 273399 30338870 ~ 30447632 (+) True hs6st1a
XM_026937072.2 mRNA upstream 483991 30225043 ~ 30237040 (+) True otomp
XM_026936332.2 mRNA upstream 509056 30205198 ~ 30211975 (+) True d2hgdh
XM_026937320.2 mRNA upstream 517282 30199694 ~ 30203749 (+) False znf622
XM_026936553.2 mRNA downstream 58356 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA downstream 58356 30781158 ~ 30845103 (+) False epha4a
XM_026936633.2 mRNA downstream 282621 31005423 ~ 31028876 (+) True slc25a36a
XM_026936134.2 mRNA downstream 338935 31061737 ~ 31097929 (+) True spsb4a
XM_026937114.2 mRNA downstream 407305 31130107 ~ 31212333 (+) False clstn2
TU86682 other upstream 1097994 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1808927 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 3099648 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 3100354 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 3163129 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 23329 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 23329 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 338928 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 628459 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1047020 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile