RNA id: XM_034303856.1


Basic Information

Item Value
RNA id XM_034303856.1
length 1463
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113540055
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30741527 ~ 30750968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCCCATCTTGTATGATGTAAAGCCTTatctgtacaagtccctgtgagtgagTTGTTACTCGGTAATTGCTCAAGAATCCAAAATAATCTTCACGCCAAAGTCTGGCAATCAATTTTCTATTCATGGTAAACTGTTGACTTCTCAAGATGAGTCTTTGCCCTGACTACCACTCAGTTGGTCTCCATCCTTGTGGTTAGGAAAAGAGAACAGCTCACCATGACCTAGAAAACCAGGAAACCAAATGTATCATGAAGGCGCTGATATCAGAGAGTTTCGAGTGACTTTACACCTACAGATTGATGATATCAATAAATTTCGAAGGTGGTGCAGCAGCAATAGGGCGTTTGCTTCTTATTTGCTCCTGCGAGTTTAAACTGGCAGCTCGTCATGAGATATTCATACCACTGAAGATACCCTGAGCTGGCACGATGAAGATGGTCCTCGCACTCCACTTCTCAGCTGCCGTGCTTCTGCTACTGTTGCTCGCTGAGCCTCCAAAGCAAGGTGCTGAAGCCTTTCCAGTGACTTGTTGTCTGAAAACTTGTGACATCAAAGTACGAAGAGATCAGCTCAAAAACTACACCATACAAGAAAAACCCTTATGTCCTGTGAAGGCTGTGAGatTCGTCACAAAGACGAACGTCACGTTCTGCTTGGACCCCTCGTCACCTTGGGCCATTAATACCATGGCCTTTTTGGACAACAGAGGCAGACGTTTTGATGGAAAGATGTACGCTAATGGAGGTCCCTCCCCCAACAATAAGACCAAGTGCACTCAGACCCGAACGTCTCAGAAGACGGCGAAAATGCACCTCACGTTCTTTTTCTTCTGCACCACTGCAGTGTTCTCCAGCATCTTTGCGAGAAATGGAGCTCCAGGAGATTGTTGCCTCAGAATAAGTCCTAATCAAGTCAGTGTGACAAGCATTGTGAGCTACTGGCAGCAGGATGAAGGGCTTTGTCCAATCACAGCAATTGCATTCACCCTTGAAAATGGGAAAGTCCTCTGCTCTGATCCTGTCTCCCCCTGGACAAAAAAGGCAATGCGGAAGGTCGACGAGGAAGCGGAACAGAAGCGAAACCACAGACATGGACAGGCACCGGATGCTCCACAGAATGGCACAGAGGGTTTACTGACTTCGACCATGTTGCCTTTGACCAGTAGATGGCCTCAAGTGCCTGCAAGTGTAGCCATGTGGCCCACTAAAGTAAAATCTTCTAAACCACAGCGAGGGTCTAAGAAGCGAATTGTagtaattaagaaaaaaaggaagaatagGAAGAAAGGAGGGAAGGGGAAAAGAAAGATTACCAAGCCACCAGTGTTCAATCACACTTCTTCTTTTACTACGTCTTCTTATAAATAAGCGCTAAtaaccatgttttcatgtaCAAATGCTATGAACTTGGGCTTAAATGCTTTTCTTTGCTATACACGTTGACTATATGACTAAAGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87486 lncRNA downstream 263293 30477403 ~ 30478234 (-) False G73834
TU87654 lncRNA upstream 19129 30770097 ~ 30771174 (-) True G73977
TU87650 lncRNA upstream 26791 30777759 ~ 30845482 (-) True G73974
XR_003404008.2 lncRNA upstream 85384 30836352 ~ 30838110 (-) True LOC113540224
TU87738 lncRNA upstream 279421 31030389 ~ 31031380 (-) True G74047
TU87756 lncRNA upstream 305517 31056485 ~ 31116436 (-) True G74060
XM_026937067.2 mRNA downstream 16870 30721032 ~ 30724657 (-) False LOC113540512
XM_026937066.2 mRNA downstream 16870 30721032 ~ 30724657 (-) True LOC113540512
XM_034303822.1 mRNA downstream 40482 30593706 ~ 30701045 (-) True epha4b
XM_026936328.2 mRNA downstream 518207 30212389 ~ 30223320 (-) False acvr1l
XM_026937106.2 mRNA upstream 22481 30773449 ~ 30775702 (-) False ccl20l
XM_026936925.2 mRNA upstream 496092 31247060 ~ 31277249 (-) True rem2
XM_034304133.1 mRNA upstream 539853 31290821 ~ 31344984 (-) False carmil3
XM_026937089.2 mRNA upstream 539853 31290821 ~ 31344984 (-) False carmil3
XM_026937088.2 mRNA upstream 539853 31290821 ~ 31344984 (-) True carmil3
TU87233 other downstream 719002 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1010670 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1165800 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 1216466 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 1216840 29524509 ~ 29524687 (-) True LOC113540697
TU87656 other upstream 22495 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1116114 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1119550 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1120191 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 1123341 31874309 ~ 31874827 (-) True G74547

Expression Profile