Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU87615 |
| length | 1063 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 5 |
| gene id | G73944 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 30746131 ~ 30767132 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0044459 | obsolete plasma membrane part | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU87604 | lncRNA | upstream | 23329 | 30721031 ~ 30722802 (+) | True | G73935 |
| TU87503 | lncRNA | upstream | 152522 | 30593150 ~ 30593609 (+) | True | G73844 |
| TU87504 | lncRNA | upstream | 152522 | 30593234 ~ 30593609 (+) | False | G73844 |
| TU87498 | lncRNA | upstream | 264506 | 30481422 ~ 30481625 (+) | True | G73839 |
| TU87379 | lncRNA | upstream | 267881 | 30477425 ~ 30478250 (+) | False | uggt1 |
| TU87625 | lncRNA | downstream | 5470 | 30772602 ~ 30772886 (+) | True | G73952 |
| TU87694 | lncRNA | downstream | 250979 | 31018111 ~ 31018474 (+) | True | G74011 |
| TU87688 | lncRNA | downstream | 263256 | 31030388 ~ 31031370 (+) | True | G74006 |
| TU87857 | lncRNA | downstream | 479958 | 31247090 ~ 31250757 (+) | True | G74158 |
| TU87899 | lncRNA | downstream | 588422 | 31355554 ~ 31356121 (+) | True | G74199 |
| XM_034303971.1 | mRNA | upstream | 267838 | 30454757 ~ 30478293 (+) | True | uggt1 |
| XM_026937167.2 | mRNA | upstream | 298499 | 30338870 ~ 30447632 (+) | True | hs6st1a |
| XM_026937072.2 | mRNA | upstream | 509091 | 30225043 ~ 30237040 (+) | True | otomp |
| XM_026936332.2 | mRNA | upstream | 534156 | 30205198 ~ 30211975 (+) | True | d2hgdh |
| XM_026937319.2 | mRNA | upstream | 542121 | 30199694 ~ 30204010 (+) | True | znf622 |
| XM_026936553.2 | mRNA | downstream | 14026 | 30781158 ~ 30845103 (+) | True | epha4a |
| XM_026936554.2 | mRNA | downstream | 14026 | 30781158 ~ 30845103 (+) | False | epha4a |
| XM_026936633.2 | mRNA | downstream | 238291 | 31005423 ~ 31028876 (+) | True | slc25a36a |
| XM_026936134.2 | mRNA | downstream | 294605 | 31061737 ~ 31097929 (+) | True | spsb4a |
| XM_026937114.2 | mRNA | downstream | 362975 | 31130107 ~ 31212333 (+) | False | clstn2 |
| TU86682 | other | upstream | 1123094 | 29619993 ~ 29623037 (+) | False | asip2b |
| TU86406 | other | upstream | 1834027 | 28874356 ~ 28912104 (+) | True | G72873 |
| trnat-ugu_8 | other | upstream | 3124748 | 27621311 ~ 27621383 (+) | True | trnat-ugu_8 |
| trnat-ugu_6 | other | upstream | 3125454 | 27620605 ~ 27620677 (+) | True | trnat-ugu_6 |
| XR_003404070.2 | other | upstream | 3188229 | 27557765 ~ 27557902 (+) | True | LOC113540696 |
| TU87706 | other | downstream | 294598 | 31061730 ~ 31097888 (+) | False | spsb4a |
| TU87898 | other | downstream | 584129 | 31351261 ~ 31353144 (+) | False | c4h22orf39 |
| XR_004578111.1 | other | downstream | 1002690 | 31769822 ~ 31776798 (+) | True | LOC113540067 |
| LOC117597174 | other | downstream | 1178916 | 31946048 ~ 31946542 (+) | True | LOC117597174 |
| LOC117597173 | other | downstream | 1191890 | 31959022 ~ 31959667 (+) | True | LOC117597173 |
