RNA id: TU87650


Basic Information

Item Value
RNA id TU87650
length 402
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G73974
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30777759 ~ 30845482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatgaaatgtacctaaattcattttttaaaaaaaaaagaaagaaagaaaacaaacaatgGCATTATATAGATAGTTGCAAATACGCACATTGTTAATCTACACAACTAGATTAAccgagcaaaaaaaaacaacaacaacaaaaaaaaaacaacatgatttGTTAGTTTGATTCCCCAGAATTAAACTACAATTAAGAAACTTGGCACAATACATTCTATCGCTCTCCAACTCCTCCACATTCCTTGCAtatttccaatcaggtgctcaAACTGAAAAACGGGAGGAAGAAAACGGTCTCGGGTTCGGAATGGAAATGCGtgttaaacagacaaacaagATCGTTGGCGTTCATGAAATGTGAATTGTCaagttttccctcttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87654 lncRNA downstream 6585 30770097 ~ 30771174 (-) True G73977
TU87486 lncRNA downstream 299525 30477403 ~ 30478234 (-) False G73834
TU87738 lncRNA upstream 184907 31030389 ~ 31031380 (-) True G74047
TU87756 lncRNA upstream 211003 31056485 ~ 31116436 (-) True G74060
TU87963 lncRNA upstream 379752 31225234 ~ 31226588 (-) True G74255
TU87966 lncRNA upstream 390931 31236413 ~ 31275474 (-) True G74256
TU87968 lncRNA upstream 390931 31236413 ~ 31310909 (-) False G74256
XM_026937106.2 mRNA downstream 2057 30773449 ~ 30775702 (-) False ccl20l
XM_034303856.1 mRNA downstream 26791 30741527 ~ 30750968 (-) True LOC113540055
XM_026937067.2 mRNA downstream 53102 30721032 ~ 30724657 (-) False LOC113540512
XM_026937066.2 mRNA downstream 53102 30721032 ~ 30724657 (-) True LOC113540512
XM_034303822.1 mRNA downstream 76714 30593706 ~ 30701045 (-) True epha4b
XM_026936925.2 mRNA upstream 401578 31247060 ~ 31277249 (-) True rem2
XM_034304133.1 mRNA upstream 445339 31290821 ~ 31344984 (-) False carmil3
XM_026937089.2 mRNA upstream 445339 31290821 ~ 31344984 (-) False carmil3
XM_026937088.2 mRNA upstream 445339 31290821 ~ 31344984 (-) True carmil3
XM_026937091.2 mRNA upstream 445339 31290821 ~ 31323220 (-) False carmil3
TU87656 other downstream 1940 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 33933 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 755234 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1046902 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1202032 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 1021600 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1025036 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1025677 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 1028827 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 1034552 31880034 ~ 31880556 (-) True G74550

Expression Profile