RNA id: TU87694


Basic Information

Item Value
RNA id TU87694
length 284
lncRNA type intronic
GC content 0.40
exon number 2
gene id G74011
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31018111 ~ 31018474 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTAGCCCAGTTCCCTTTAGCCagtgctgctgttgtgtttttggttgttAATGTCTTTTGGTGCTTTATcattaaattcacattttgGCTACGCAACACTGTCGTAATTCCTCACCAAATAACATACACATAAGATACTAGCACACGTCTGCtaaataaacaccacagCAAATCAGAAACGCGTCAGCCTAGCGAAAACAATTTATTACGACGTTACTTCTGCTATTACAGTGAGGAGTCATTCCGTTTCCTTTAGGCAGTTTCACTGTTTCCaaatttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87625 lncRNA upstream 245225 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 295309 30721031 ~ 30722802 (+) True G73935
TU87503 lncRNA upstream 424502 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA upstream 424502 30593234 ~ 30593609 (+) False G73844
TU87498 lncRNA upstream 536486 30481422 ~ 30481625 (+) True G73839
TU87688 lncRNA downstream 11914 31030388 ~ 31031370 (+) True G74006
TU87857 lncRNA downstream 228616 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 337080 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 505629 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 509382 31527856 ~ 31528070 (+) True G74315
XM_026936553.2 mRNA upstream 173008 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA upstream 173008 30781158 ~ 30845103 (+) False epha4a
XM_034303971.1 mRNA upstream 539818 30454757 ~ 30478293 (+) True uggt1
XM_026937167.2 mRNA upstream 570479 30338870 ~ 30447632 (+) True hs6st1a
XM_026937072.2 mRNA upstream 781071 30225043 ~ 30237040 (+) True otomp
XM_026936134.2 mRNA downstream 43263 31061737 ~ 31097929 (+) True spsb4a
XM_026937114.2 mRNA downstream 111633 31130107 ~ 31212333 (+) False clstn2
XM_026937113.2 mRNA downstream 114795 31133269 ~ 31212333 (+) False clstn2
XM_034304124.1 mRNA downstream 138893 31157367 ~ 31212333 (+) True clstn2
XM_034303992.1 mRNA downstream 200454 31218928 ~ 31221020 (+) True LOC113540056
TU87615 other upstream 250979 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 250979 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1395074 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2106007 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 3396728 27621311 ~ 27621383 (+) True trnat-ugu_8
TU87706 other downstream 43256 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 332787 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 751348 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 927574 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 940548 31959022 ~ 31959667 (+) True LOC117597173

Expression Profile