RNA id: XM_026936134.2


Basic Information

Item Value
RNA id XM_026936134.2
length 2352
RNA type mRNA
GC content 0.49
exon number 4
gene id spsb4a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31061730 ~ 31097929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctgtctctctctctctctctctctctctcctgtccctTCACTCCCTGTCTCTACTTGACAAGAACAGAAGATTGCTTTTCACCATGAGGCAGCTCTTGTGCTGCTGCTTCCTACAACGTCTACCTTTCTtcgttctccctctctctgcccCGTCCTCTTTCCCTTCATCCATGGGCTGATTGAACAAGAGGAGTTTCCGAGCTTGAACGGGACAGATTAGCCCCAAGGAGGGGGTTGCAGAAGAACAGAAGGGGGGTGACATCTCAGGGGAGACGCTTCTTTTCTCTTGCCTCAGCAGGgcagggagaaagaaagacaagaaaggGAGAGGCAGCGTGCTCTTTTCAATGCAGAGgagcttttttctttccttgggTTTCCTTTTATTCGCCCTGCTTTGTTTCTTCATTCCCCGTTGTCCCGAGTGCGGGGACAAAAGTGAACTACGGCGGACAGGACTTGCACAACAGTAAgcattgtGGCTTGTGTGAAGCTAGCATTTGCTGACCAGATTCAGTGGACACCATCCTGACACTTTGACGCTTTGATGAGGTAACAGTCAACCAATTTGCCCAACATCCCACTGAGGAACCATGGGCCAGAAGATTTCAGGAAGCATCAAGTCGGTGGACGTGAGAGGCGAGCCATCCTACCGCCCCTTACGGAGAGAACTCCGAGGTCCAGATTTCTTCAAGCCAGCCAGGCTCGACCTGCTGCTGGATATGCCAGCAGTGTCCTCCGAGCATCAGCTGCAGCATGCATGGAACCCAGATGATCGCTCTCTCAATATCTTCATCAAGGAAGATGACAAGCTGACTTTCCACCGCCACCCGGTGGCCCAGAGCACGGATTGCATCCGAGGGCGAGTGGGCTATACGCGTGGCCTTCACGTTTGGCGCATCCATTGGCCCGCCCGGCCGGGTACCCATGCCGTAGTGGGTGTGGCCACATCAGAGGCTCCTCTCCATTCGGTGGGATACACCTCTCTGGTAGGTAGTGACAGTGATTCCTGGGGCTGGGACCTGGGCCGCAACAAGCTCTACCACAACAGCAAAAACCAACCAGCTTCATCGGCACCCACCTACCCCAGCTTCCTGGAGCCTGAGGAAGCCTTTGTGCTCCCTGACACCctggtggtggtgctggatATGGACGAGGGGACACTTAGTTTCATGGTGGATGGACAGTACCTTGGAGTGGCCTTCAGGGGGCTCAAGGGAAAGAAGCTGTATCCCATCGTTAGTGCAGTATGGGGACACTGTGAGATCACCATGCGCTACATCAATGGCTTGGATCCTGAGCCCCTGCCTCTGATGGACCTGTGCAGGAGAGCAGCGCGTCTAGCTCTGGGCCGTGACCGACTGCAGCAGATCGAGACCTTGCCTTTACCCCAATCTCTAAAAAATTACCTCCAATACCAATGATGTGGACGGATCCAGCAACACACAGATTCACAAAGCGCAAGCCTCGAGGTGCGGCGACTCTAGCGCCAACAACAGGGCGAATGTTTACACTACAACACACTCTGTGGCTCCTACCAGAGATGTTCTGTTCCTTCcaccatttctctttttttaacgTTTTAACTTTTTGGATGGTATGTTGAGATGGACTGTGAGGTTGGAGTGTAAGGATGCCACAGCGCCCTCCACTGGTAGTCTCTCCCTGAATGTTAGGGCttggcataaaaataaaaaaaatgctacacaaCCTTGGGAATGCTCGTTCGAGGCTCGCAGCGATGCTTAAACATTCCAGAAGGAAACCAAGCACCTTAGAGGCCAGActctggagctggagctggagcggTATCCGGTTTCTAGCAGGTCTTTCCTGTGCACAAGGGCGACCGCTACCTACATCAAGACCCGATTCATGAGACTCGTCAAGAAGTGCACtaatacagcacaaacactccAAGCaaacatttttcccccaaatctAATTTGAGTCACTTTTCTATTCCTGAGTGTGTACCTTAATTGTTAAGGtgagtgtgatttttttcccccccaaggTTGATTTTATGACTATTATGATACAGATCCTGTAACAAGTTTAGtgctatgttttattttatttatctggaTGTAATTCCTTTTTATTGAATATGAGATTGTGCATACTAGCACATGGACATGATAAATCCATCCCAAATGGCTTTTTATTTGAAACCAGGATGCtgctttttttctattattattattattattattaatatgattattattattattgatgctGGTTTGTCTGCCTGATCAAACTGGAGATCTGCAGTAAACAGTGGAATGTAAGGACACCGCTAAACAttagtatatttaaaatgtgaataaaatccaAGTGAATGAGAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87688 lncRNA upstream 30367 31030388 ~ 31031370 (+) True G74006
TU87694 lncRNA upstream 43263 31018111 ~ 31018474 (+) True G74011
TU87625 lncRNA upstream 288851 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 338935 30721031 ~ 30722802 (+) True G73935
TU87503 lncRNA upstream 468128 30593150 ~ 30593609 (+) True G73844
TU87857 lncRNA downstream 149161 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 257625 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 426174 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 429927 31527856 ~ 31528070 (+) True G74315
TU88025 lncRNA downstream 433524 31531453 ~ 31533223 (+) True G74309
XM_026936633.2 mRNA upstream 32861 31005423 ~ 31028876 (+) True slc25a36a
XM_026936553.2 mRNA upstream 216634 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA upstream 216634 30781158 ~ 30845103 (+) False epha4a
XM_034303971.1 mRNA upstream 583444 30454757 ~ 30478293 (+) True uggt1
XM_026937167.2 mRNA upstream 614105 30338870 ~ 30447632 (+) True hs6st1a
XM_026937114.2 mRNA downstream 32178 31130107 ~ 31212333 (+) False clstn2
XM_026937113.2 mRNA downstream 35340 31133269 ~ 31212333 (+) False clstn2
XM_034304124.1 mRNA downstream 59438 31157367 ~ 31212333 (+) True clstn2
XM_034303992.1 mRNA downstream 120999 31218928 ~ 31221020 (+) True LOC113540056
XM_026936712.2 mRNA downstream 124358 31222287 ~ 31236901 (+) True copb2
TU87615 other upstream 294605 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 294605 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1438700 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2149633 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 3440354 27621311 ~ 27621383 (+) True trnat-ugu_8
TU87898 other downstream 253332 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 671893 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 848119 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 861093 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 861113 31959042 ~ 32330845 (+) False LOC117597173

Expression Profile