RNA id: TU87857


Basic Information

Item Value
RNA id TU87857
length 3646
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G74158
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31247090 ~ 31250757 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccttttgTCCCCCAAAACACTGTGAGCAACGTTCATCAACAGTGAGTAATGCATGAGCTGACAATGAAATGACACTGCGATGTTGACTTCAGAGCAACGTTTCCAGAACGTTTTGGTGTTGCATAAGCGTGTGTGGCCAGCCCCCACAACAATGCTCCTCGAGCTCAGTTCAAGTACGATCGTGTAGAAAAAGGGAAGAGTTTAAATGTAAGGACATAAAACAATAGGACGAGATGTACTAAATGGTTTGCCATTTGTTTCTCTAAAGCAGGGGTATTCAGCTAAAGTTTGTAAAGGTCCAGTTACGTATAATTCCTTGTGTAcaaaggtctggataagcaactaGCATGACTGACTGTTACCttttaatgattaaacattaaagaATTTGTTTATAGCTATTTGAACAATTGGAAGTGGTTATGTTTCCTTTCATAGTGGTGCTTCAtcttaccacttttgactaacGCCATGGACTCTGAAGAGATGAGACACATCTCTACGTCTTGGCGCAGAGAATAAACATACTTCTTTTGTCCAAcagtctttaaacattctgtttttgtctacgactttttttttcctaaaaacagttaatcagatcagatcagagatGGTAAATAAAACGAAAGGTCTATGAAAGTCGGTGAAAACTCTTTCCTTTCTGAGCTCTAGCCccgtagctagtctctggtctgatcagctgccttcagctattaaaaataatttacataaagaCACGTGATTGGATAAACTGTAACAGCTACAGAACTGAGCTGGTTCGTGGTTAGAAAACTAGAACTACGGCAAGATTTTTGTTCATATGGTTATCAGCTCTGCTAcaccattattttattattaaatactttgCTATCCGCAGTCCAGACCGCCATCCACCGACTGATGACCCCTGCTCTAAAGTCTCATTTTCACAGAGAACCCTAAATTCGAAGTGAATTGAATGACAGTGCTTATATAGTTGAAAAATGTGGTAAAGACTACAAACCAACCCTGCATTTCAACAGTGTTTCTGTTGCGTTAACTCTGATTAACTTCCCTTCGTTATTATCCTTTGGgccatttttttgtcttcatttcatttgcattattAGCTCAAGTGAAATTCGTTAGAtggaatttttttcatttaaagctGTGTGAAACAGCTGATGAAGCTGTTTAATAAACCATTTTAAACGcttgatatttttaaatcaggATTAATGTAGACAACTACATCGTCTCTGGCAACTACATGACAGACGACATTTATTCTGTGTGGGCTGTAGAGAGTGGAGTTTATGCGCATAGACTCCAGCTCGGTTTTCTGGGGGGTTTAAagacaagtgcttgtgtttaatgtgGGGGTCTAGATGCTATTAAATTAATCAATTGGTGTGTctaattaaagaagaaaatctggcaaccttggaggcatgaactacatgcaggtgattttagTAATCTGAATGCAACACCCaaaaaatcaacttaagcacgtgtgtaacccgactctgaatacgacgaactttccccatgtaaatatttacattacttttgaacttaagtcaACGATTCCCGAATACGGCCCTTGCGTAGCTATTTAGCGAGCTAATATGACTTGTTCAGCGCTACATTGCGCTTGCGGCCAATTTCCATTGTACTGCAAGTGGCTAGACGTGGTCAATCGAGTCAGAAAGATTGACAAGAGCGTGTTAAAACAGTATTGAAACACAGGGTAAGACTGTGGATAAAGACGTAGGAGTTCCATAGTATTGCTTCCTTACTGTATACGCAGCCAAAAAGACATATATAGAGACAATTATctatatttattgtttcttaTGAGCTTGTTATTCTCAGAGCATGGCTATAATCCATGTCTTTGTGGAATGTGGTTTAAGTGCAAGCAGTCGTTCAGGCATACATTTATTCGCAGTCTTGGAGGTAAagcgagagtgtgtgagagagagagagagtaaaaaaggTGTTTCTCACAGAgatttgtctgtctgcctgtgctGTTTCTTTTAGTGCAAATAAGTTAGTGGCTAAATGCAACATGTCAAACTGAAGGACTGAAGTGAAATTATTATAGTATTTCCACAACCTCATGTGGCAAATCATATTGCTTTCATCATTCAGCTATCTATTAACATGTCCTTAGAACGAAAGAAATGGTGTCCATGCACTGTATGAGTGAAACGTTCATTTAAGAATTAAAGTTGTTTATTCAGAGAGGAGCATCCCGAATATTAAAGGGCGCATAATTCCTACAATTCGAAATTTTATAGATGTCTTAATATATACATAGTTAAAaagattgtgtttatttataatgcCCCACATTCTTAAGGGCAGAAAAATCCATTTTTAAGACTTTAAGGGTCTTTTCTGAGGGGAAATCAACTACTATATGCAAAATGTCCATGCACTAATTATAATACTGTCTTACACTTCAAGCTTAATTTCAGCATAAAGCTTCTCAAGGAGCTACACTACAACTgcctgtgtaagtgtgtgataaggatttcttttctttccttcttcctcttGAGTATTGATTtatgaaacaacaaaaataataaagtctGCAGTAAACTTCTACTCAACTTCTATGCCTGTCGTTTTATAGATGTGTGTGGCAGCATGGGAAAACCCATTTTTTCAGACTTtgctgaactgttttatttgcaCACATCTGAAACAAGATGAAAAAGTATAGCATTTTAAAGCCCCCCAAAattgaaaagggagaaaatcgCATTTAAAGctttcattccaattccactgaaagatgccaCACCTGCGAATTTCTACATTTATAGCCTGATCTACTGGTGAAAAAACAACACTGCTGccaattttaaagaattataagtttccaatcagaaatgagttctcactttgattatcagcgtCATCCACATCtttgtctcatcacctgaggtataAAATCACTCGCTGCGTTTGTCGGTTCTGTTGGCTAAAATACAATCACTTTGTTATTAATGACTTTGTATTACGtcatttaaacagttaaaaactttttctcctctgagtgtgtaagcgctcttctctgttttgatgatgacagCTGGGAAGGTAAAGCTGTCGGAGTATATCATTGACAGAAAAAATCTTTTCtagcgtttttgttttttccagaattcagccacagcgatagccaaagggttttcccagaccgccacacGTATGACATACCGTATATATGATaccaaaacaaacattattacaGCTTTCCCTGGATTTAACCTGACAAAATTGATTCCTGGTTTTATTTTCTATCTGCAGTAACTAATCCTTAATCTCTACATCAGGGCACTGAGGTCATGACAGGAGCGAGATTTCTGCCGCAGCATTCGGTTGCCTTTGTGTCGCTCTTGCTCACGGATGCGCTCGCGGCCGTGATGTGAGCGCGGAACCAGGCCTGACAGGAAGCGCTTGGCCCTGCTGGTAAGGCTTTCACGGCGGCCACCTCCGGGTGATCCCTCAGTCCAGCCAGGCCCCAGGCTGTGGCCACGGGCAGCCCTCACCGCCGTCTCCAGGAGCTCGTTAGTGCCGTGATCCAGCGAGACGGAGAGCTCCAGGTACACGCAGTCGAACATCATGGCGTTGGAGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87688 lncRNA upstream 215720 31030388 ~ 31031370 (+) True G74006
TU87694 lncRNA upstream 228616 31018111 ~ 31018474 (+) True G74011
TU87625 lncRNA upstream 474204 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 524288 30721031 ~ 30722802 (+) True G73935
TU87503 lncRNA upstream 653481 30593150 ~ 30593609 (+) True G73844
TU87899 lncRNA downstream 104797 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 273346 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 277099 31527856 ~ 31528070 (+) True G74315
TU88025 lncRNA downstream 280696 31531453 ~ 31533223 (+) True G74309
XR_004578069.1 lncRNA downstream 293941 31544698 ~ 31546795 (+) True LOC117597165
XM_034303408.1 mRNA upstream 3011 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936712.2 mRNA upstream 10189 31222287 ~ 31236901 (+) True copb2
XM_026936713.2 mRNA upstream 10189 31222287 ~ 31236901 (+) False copb2
XM_034303992.1 mRNA upstream 26070 31218928 ~ 31221020 (+) True LOC113540056
XM_026937114.2 mRNA upstream 34757 31130107 ~ 31212333 (+) False clstn2
XM_026936980.2 mRNA downstream 100444 31351201 ~ 31353130 (+) True c4h22orf39
XM_026935828.2 mRNA downstream 297523 31548280 ~ 31560707 (+) True prmt5
XM_034303928.1 mRNA downstream 315524 31566281 ~ 31581540 (+) True ap1g2
XM_026937095.2 mRNA downstream 333343 31584100 ~ 31586755 (+) True zp3f.2
XM_034304000.1 mRNA downstream 336504 31587261 ~ 31594687 (+) False LOC113540625
TU87706 other upstream 149202 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 479958 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 479958 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1624053 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2334986 28874356 ~ 28912104 (+) True G72873
TU87898 other downstream 100504 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 519065 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 695291 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 708265 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 708285 31959042 ~ 32330845 (+) False LOC117597173

Expression Profile