RNA id: XM_026936980.2


Basic Information

Item Value
RNA id XM_026936980.2
length 682
RNA type mRNA
GC content 0.45
exon number 3
gene id c4h22orf39
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31351201 ~ 31353144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGAAGTAGGCATTAGGTGGCAGTGCAGAGCCgctaaaataaagctgaattcagcagcagcagcagaagaagaagcGCGACATGGGAGAGACGCAGTCACCCTGGCGTCCACCACGGCTGTGTGACGTCTACTGGACCGAATTCAGACACTGTAAGAGTTTACGCAACCGTTTCCATCACTACTACACGTACGGGACGTCGCCCGCCTGCCTGCAGTGGAAAGACGACTATGAGGCGTGTCGAGAGTGGGAGCGGAGCCGCAGTCCACCCGCTAAGGAGAGTCTTCAGAAAAGTGAGAGAAATCGAGTGTCTGAACAGAAGAACTTCCCTCCGTTTTGGGAGATGAGACAAAAACCACCATCTGACTGGCATTTGCCTCTTAATGAGGACAAAAATTAAAGATTCTTGAAGGCACAAGAAACAACAttaagctcttttttttattatttatttattcagcttATTCAGTCTGCCACCGTTTCTCTGCGTAGCATCTAACATCCAAGACCTGTTCTGTGGCCTCTTCATGGTGTTTCAGTGAACTTTTTCAAAATCAGTGTACATTAATTCTGTATAAATCCAATCTCACAGATGCTTCAGATAGTTTCAGAAGTAACTGAGCCTCGTTGATGTGTGACTTTTGGTTCATGACTTGAAATAAAGACCTTATTGAAAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87857 lncRNA upstream 100444 31247090 ~ 31250757 (+) True G74158
TU87688 lncRNA upstream 319831 31030388 ~ 31031370 (+) True G74006
TU87694 lncRNA upstream 332727 31018111 ~ 31018474 (+) True G74011
TU87625 lncRNA upstream 578315 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 628399 30721031 ~ 30722802 (+) True G73935
TU87899 lncRNA downstream 2424 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 170973 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 174726 31527856 ~ 31528070 (+) True G74315
TU88025 lncRNA downstream 178323 31531453 ~ 31533223 (+) True G74309
XR_004578069.1 lncRNA downstream 191568 31544698 ~ 31546795 (+) True LOC117597165
XM_034303408.1 mRNA upstream 107122 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936712.2 mRNA upstream 114300 31222287 ~ 31236901 (+) True copb2
XM_026936713.2 mRNA upstream 114300 31222287 ~ 31236901 (+) False copb2
XM_034303992.1 mRNA upstream 130181 31218928 ~ 31221020 (+) True LOC113540056
XM_026937113.2 mRNA upstream 138868 31133269 ~ 31212333 (+) False clstn2
XM_026935828.2 mRNA downstream 195150 31548280 ~ 31560707 (+) True prmt5
XM_034303928.1 mRNA downstream 213151 31566281 ~ 31581540 (+) True ap1g2
XM_026937095.2 mRNA downstream 230970 31584100 ~ 31586755 (+) True zp3f.2
XM_034304000.1 mRNA downstream 234131 31587261 ~ 31594687 (+) False LOC113540625
XM_026937209.2 mRNA downstream 234131 31587261 ~ 31594677 (+) True LOC113540625
TU87706 other upstream 253313 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 584069 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 584069 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1728164 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2439097 28874356 ~ 28912104 (+) True G72873
XR_004578111.1 other downstream 416692 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 592918 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 605892 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 605912 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 607739 31960869 ~ 31965136 (+) True LOC117597122

Expression Profile