RNA id: TU87974


Basic Information

Item Value
RNA id TU87974
length 4155
lncRNA type sense_over
GC content 0.42
exon number 5
gene id rem2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31247060 ~ 31277249 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaggaagaggaggaagaggaggatgcgCGCTGGCATGTCATGTCGTGCACAGAGCTCGCGCTGGTGAAGGAGTGCCTCTGTGACCACAGGAAACCATGTCTGAGCAGGCTTATGGCTTGACTTTATCCGCTGCACCTCCACTTCGCAGAGGAAGCACACCGCTACCGATCAAGCACCTGTTAAGGCGAGAGGAAGCCGTGTCTGAGGATTATGATTGGATACCGGGGCTCGATGCTGCTGATGCTCCGCCCATCAGCAGCAGTGATGCTCAAGATGCACCTCTCCTTCTTAAGGTTCCAGAGCAAAAGTACCGCGGGCCCTGCGGATCGTCCTGTTGGGGCAGAACGGAGTGGGCAAATCGTCACTGGCCCTCTCTCTCGCTGGGCTGTCGGACAGATCACTTTCAGTAGACTCTGAAACACAAGCGAGCGaTGAAGGATATCATCGAAGGGTGACAGTAGATGATGAGGACAGCTCAATCTTGGTGTATGACAACTGGAAACAGAAGCCCACTCCAACGCCATGATGTTCGACTGCGTGTACCTGGAGCTCTCCGTCTCGCTGGATCACGGCACTAACGAGCTCCTGGAGACGGCGGTGAGGGCTGCCCGTGGCCACAGCCTGGGGCCTGGCTGGACTGAGGGATCACCCGGAGGTGGCCGCCGTGAAAGCCTTACCAGCAGGGCCAAGCGCTTCCTGTCAGGCCTGGTTCCGCGCTCACATCACGGCCGCGAGCGCATCCGTGAGCAAGAGCGACACAAAGGCAACCGAATGCTGCGGCAGAAATCTCGCTCCTGTCATGACCTCAGTGCCCTGATGTAGAGATTAAGGATTAGTTACTGCAGATAGAAAATAAAACCAGGAATCAATTTTGTCAGGTTAAATCCAGGGAAAGCtgtaataatgtttgttttggtATCATATATACGGTATGTCATACgtgtggcggtctgggaaaaccctttggctatcgctgtggctgaattctggaaaaaacaaaaacgctaGAAAAGATTTTTTCTGTCAATGATATACTCCGACAGCTTTACCTTCCCAGctgtcatcatcaaaacagagaagagcgcttacacactcagaggagaaaaagtttttaactgtttaaatgaCGTAATACAAAGTCATTAATAACAAAGTGATTGTATTTTAGCCAACAGAACCGACAAACGCAGCGAGTGATTTtatacctcaggtgatgagacaaaGATGTGGATGacgctgataatcaaagtgagaactcatttctgattggaaacttataattctttaaaattggCAGCAGTGTTGTTTTTTCACCAGTAGATCAGGCTATAAATGTAGAAATTCGCAGGTGtggcatctttcagtggaattggaatgaaagCTTTAAATGcgattttctcccttttcaatTTTGGGGGGCTTTAAAATGCTATACTTTTTCATCTTGTTTCAGATGTGtgcaaataaaacagttcagcaAAGTCTGAAAAAATGGGTTTTCCCATGCTGCCACACACATCTATAAAACGACAGGCATAGAAGTTGAGTAGAAGTTTACTGCagactttattatttttgttgtttcataAATCAATACTCaagaggaagaaggaaagaaaagaaatccttatcacacacttacacaggcAGTTGTAGTGTAGCTCCTTGAGAAGCTTTATGCTGAAATTAAGCTTGAAGTGTAAGACAGTATTATAATTAGTGCATGGACATTTTGCATATAGTAGTTGATTTCCCCTCAGAAAAGACCCTTAAAGTCTTAAAAATGGATTTTTCTGCCCTTAAGAATGTGGGgcattataaataaacacaatcttTTTAACTATGTATATATTAAGACATCTATAAAATTTCGAATTGTAGGAATTATGCGCCCTTTAATATTCGGGATGCTCCTCTCTGAATAAACAACTTTAATTCTTAAATGAACGTTTCACTCATACAGTGCATGGACACCATTTCTTTCGTTCTAAGGACATGTTAATAGATAGCTGAATGATGAAAGCAATATGATTTGCCACATGAGGTTGTGGAAATACTATAATAATTTCACTTCAGTCCTTCAGTTTGACATGTTGCATTTAGCCACTAACTTATTTGCACTAAAAGAAACagcacaggcagacagacaaatcTCTGTGAGAAACAccttttttactctctctctctctcacacactctcgctTTACCTCCAAGACTGCGAATAAATGTATGCCTGAACGACTGCTTGCACTTAAACCACATTCCACAAAGACATGGATTATAGCCATGCTCTGAGAATAACAAGCTCAtaagaaacaataaatatagATAATTGTCTCTATATATGTCTTTTTGGCTGCGTATACAGTAAGGAAGCAATACTATGGAACTCCTACGTCTTTATCCACAGTCTTACCCTGTGTTTCAATACTGTTTTAACACGCTCTTGTCAATCTTTCTGACTCGATTGACCACGTCTAGCCACTTGCAGTACAATGGAAATTGGCCGCAAGCGCAATGTAGCGCTGAACAAGTCATATTAGCTCGCTAAATAGCTACGCAAGGGCCGTATTCGGGAATCGTtgacttaagttcaaaagtaatgtaaatatttacatggggaaagttcgtcgtattcagagtcgggttacacacgtgcttaagttgattttttGGGTGTTGCATTCAGATTActaaaatcacctgcatgtagttcatgcctccaaggttgccagattttcttctttaattagACACACCAATTGATTAATTTAATAGCATCTAGACCCCcacattaaacacaagcacttgtctTTAAACCCCCCAGAAAACCGAGCTGGAGTCTATGCGCATAAACTCCACTCTCTACAGCCCACACAGAATAAATGTCGTCTGTCATGTAGTTGCCAGAGACGATGTAGTTGTCTACATTAATcctgatttaaaaatatcaagCGTTTAAAATGGTTTATTAAACAGCTTCATCAGCTGTTTCACACagctttaaatgaaaaaaattccaTCTAACGAATTTCACTTGAGCTaataatgcaaatgaaatgaagacaaaaaaatggcCCAAAGGATAATAACGAAGGGAAGTTAATCAGAGTTAACGCAACAGAAACACTGTTGAAATGCAGGGTTGGTTTGTAGTCTTTACCACATTTTTCAACTATATAAGCACTGTCATTCAATTCACTTCGAATTTAGGGTTCTCTGTGAAAATGAGACTTTAGAGCAGGGGTCATCAGTCGGTGGATGGCGGTCTGGACTGCGGATAGcaaagtatttaataataaaataatggtgTAGCAGAGCTGATAACCATATGAACAAAAATCTTGCCGTAGTTCTAGTTTTCTAACCACGAACCAGCTCAGTTCTGTAGCTGTTACAGTTTATCCAATCACGTGtctttatgtaaattatttttaatagctgaaggcagctgatcagaccagagactagctacggGGCTAGAGCTCAGAAAGGAAAGAGTTTTCACCGACTTTCATAGACCTTTCGTTTTATTTACCatctctgatctgatctgattaactgtttttaggaaaaaaaaagtcgtagacaaaaacagaatgtttaaagactgTTGGACAAAAGAAGTATGTTTATTCTCTGCGCCAAGACGTAGAGATGTGTCTCATCTCTTCAGAGTCCATGGCgttagtcaaaagtggtaagaTGAAGCACCACTATGAAAGGAAACATAACCACTTCCAATTGTTCAAATAGCTATAAACAAATtctttaatgtttaatcattaaaaGGTAACAGTCAGTCATGCtagttgcttatccagacctttgTACACAAGGAATTATACGTAACTGGACCTTTACAAACTTTAGCTGAATACCCCTGCTTTAGAGAAACAAATGGCAAACCATTTAGTACATCTCGTCCTATTGTTTTATGTCCTTACATTTAAACTCTTCCCTTTTTCTACACGATCGTACTTGAACTGAGCTCGAGGAGCATTGTTGTGGGGGCTGGCCACACACGCTTATGCAACACCAAAACGTTCTGGAAACGTTGCTCTGAAGTCAACATCGCAGTGTCATTTCATTGTCAGCTCATGCATTACTCACTGTTGATGAACGTTGCTCACAGTGTTTTGGGGGAcaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87963 lncRNA downstream 20502 31225234 ~ 31226588 (-) True G74255
TU87756 lncRNA downstream 130654 31056485 ~ 31116436 (-) True G74060
TU87738 lncRNA downstream 215710 31030389 ~ 31031380 (-) True G74047
TU87650 lncRNA downstream 401608 30777759 ~ 30845482 (-) True G73974
TU88199 lncRNA upstream 290030 31567051 ~ 31650584 (-) True G74417
TU88244 lncRNA upstream 459271 31736292 ~ 31785757 (-) True G74458
TU88271 lncRNA upstream 467330 31744351 ~ 31745462 (-) True G74479
TU88242 lncRNA upstream 476100 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA upstream 476100 31753121 ~ 31756304 (-) False G74457
XM_026937106.2 mRNA downstream 471388 30773449 ~ 30775702 (-) False ccl20l
XM_034303856.1 mRNA downstream 496122 30741527 ~ 30750968 (-) True LOC113540055
XM_026937067.2 mRNA downstream 522433 30721032 ~ 30724657 (-) False LOC113540512
XM_026937066.2 mRNA downstream 522433 30721032 ~ 30724657 (-) True LOC113540512
XM_034303822.1 mRNA downstream 546045 30593706 ~ 30701045 (-) True epha4b
XM_034304133.1 mRNA upstream 13800 31290821 ~ 31344984 (-) False carmil3
XM_026937089.2 mRNA upstream 13800 31290821 ~ 31344984 (-) False carmil3
XM_026937088.2 mRNA upstream 13800 31290821 ~ 31344984 (-) True carmil3
XM_026937091.2 mRNA upstream 13800 31290821 ~ 31323220 (-) False carmil3
XM_034303333.1 mRNA upstream 76881 31353902 ~ 31356972 (-) True LOC113540523
TU87656 other downstream 471271 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 503264 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1224565 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1516233 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1671363 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 590061 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 593497 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 594138 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 597288 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 603013 31880034 ~ 31880556 (-) True G74550

Expression Profile