RNA id: TU88025


Basic Information

Item Value
RNA id TU88025
length 528
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G74309
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31531453 ~ 31533223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCCTCTTGTCCCAGCCGCAGACCATGGTGCCCATGCTCAGACCCATGCCTTTGTACTGGTACACCATGTTAGCCAGCAGTTTGGAGGCGGCCGCGACTGAAATGCGCTCCTTGTTGCGCAGCTCGTAGATGCGGCACTGCCTCGCCAGCAGACGCTCCCAGAAACTGCAGTCAGCAGCTCCGCCTGCCATGGTGCCCAGCAGATACGGGTTGATCTCGATGACCTTCTTCACTGTCTGAGAGGCGATGTACGACCCAGCTGTCGCCCGGGAGTCCACTGCCACGATGACGCCGTGCTGAAATTTAAACGCTAAAGTAGTTGTTCCGTGAAGAAACTCAATTTTTCTCTCAATTCCATCTTCTTCTCCTTCAAAAGGGCTCAGTGCGAAATTGAGACGCTCTCCTGAAGCTTCACCGACGCCGAGATCTGCATCGTTAAAGCCACAGCCGAATGGAAAAGACTGTTCAAAATCCGCACACTCACTCTTCAGCACATCAGCCAGCGCCATCTTTACAAATATCACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578070.1 lncRNA upstream 257 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA upstream 3383 31527856 ~ 31528070 (+) True G74315
TU87899 lncRNA upstream 175332 31355554 ~ 31356121 (+) True G74199
TU87857 lncRNA upstream 280696 31247090 ~ 31250757 (+) True G74158
TU87688 lncRNA upstream 500083 31030388 ~ 31031370 (+) True G74006
XR_004578069.1 lncRNA downstream 11475 31544698 ~ 31546795 (+) True LOC117597165
TU88103 lncRNA downstream 174005 31707228 ~ 31707436 (+) True G74370
TU88120 lncRNA downstream 201433 31734656 ~ 31743095 (+) True G74384
TU88089 lncRNA downstream 236598 31769821 ~ 31775982 (+) False LOC113540067
XR_004578059.1 lncRNA downstream 244898 31778121 ~ 31846428 (+) False LOC113540254
XM_026936980.2 mRNA upstream 178323 31351201 ~ 31353130 (+) True c4h22orf39
XM_034303408.1 mRNA upstream 287374 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936712.2 mRNA upstream 294552 31222287 ~ 31236901 (+) True copb2
XM_026936713.2 mRNA upstream 294552 31222287 ~ 31236901 (+) False copb2
XM_034303992.1 mRNA upstream 310433 31218928 ~ 31221020 (+) True LOC113540056
XM_026935828.2 mRNA downstream 15057 31548280 ~ 31560707 (+) True prmt5
XM_034303928.1 mRNA downstream 33058 31566281 ~ 31581540 (+) True ap1g2
XM_026937095.2 mRNA downstream 50877 31584100 ~ 31586755 (+) True zp3f.2
XM_034304000.1 mRNA downstream 54038 31587261 ~ 31594687 (+) False LOC113540625
XM_026937209.2 mRNA downstream 54038 31587261 ~ 31594677 (+) True LOC113540625
TU87898 other upstream 178309 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 433565 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 764321 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 764321 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1908416 29619993 ~ 29623037 (+) False asip2b
XR_004578111.1 other downstream 236599 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 412825 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 425799 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 425819 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 427646 31960869 ~ 31965136 (+) True LOC117597122

Expression Profile