RNA id: XR_004578111.1


Basic Information

Item Value
RNA id XR_004578111.1
length 2276
RNA type misc_RNA
GC content 0.35
exon number 5
gene id LOC113540067
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31759889 ~ 31776798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAACCTGCTACAGGAATGCCATAGTGTTCAAATGTCTTTATGTTGCTACATTTTTCATCTAAGTTTTCATCTCTGGTTCATCTTTAGGTTGTttcttattacatttttatttaattttttgtactTCATTAAGGCCAGAATGAATAATTATGGACTTGTATAAAGAGgattttcttactttttctcCAGAAAGGAATATGGGTCGATTCTGAAAAGTCATCCATTACTTGATATTTACCAGGAAGTAGTTTGTATCAGTGCTTTTTTATAGTTAAAGTTAGGCTGAACTGTCAGAGGGTTTTTGTGCTGAGGATTATCACTGTGCTTTGACTACCACAGTGACTCAAACACAGTTAAGCCCTGTACAAAATACCTGTGTGCCATTTTCTTTATCTGGAAGTGCATTAAACAACTGAAGACTCAGGACTGCTGGACAATCACAGCTGCATTACTCTATGGaacttatttttgtgtgtttttggaatatttttggGGATTTTACTGTGGAGAAATGTTAGTGCTTGCATGGAGGAtgaatgaaatggaaatggGAGATTTCTACAAACTACACTGTATATTCTTACTGGATGTTCAATAAGAAGCATTGAGACCATGGTAATATGTTTAAGGACTGTTTTgggcagaagaaaaaaacttttggaAAGCCAATTAGCCATATCATCACACCAAGTTTATATATGCTAAAACTCTTGTTCTTGAGACGATCTTGGGGCACAGGGTTTTTGTAAAGGCTTGAATCACGGTGACACTGATGCTCTGACTTTCGGAAAACCGATTAAACTGACCGTCGAACCAAagaacacgtctccgtCTCTGCCTACTCTATCAATAttatcttttcacactgagaaGGAGAAGCAGGAAACGTGTCTGGCTGCAGGCTTCTTTCCAAAACAAGGCCCATTATCTCTGTCCAAAGGCGACAGTACAACTAATTTCAAAGTTGATAATGCTGCGCTGTCCTCAACTGGGACCTACTACTTCGCTGCATTTTCCGAAGAAATTGATatttgcaaaatgaaaaatataaacattactaaaaatgatggaaaaaaatcaacAGAAACAGTAACAGTACAAACCTCAACCTGTGAGCCGCCCAGCTCGATCAGTGACAGTAGATCTGGTAATCAGACCGGACTAAATGAAATCAGTGGTTCTGgTGATCCTAAGGGGAACATGATGGCATTGATTGTGACTTTTCTCAGAATTACTTTTGCTAAAGCAGTTGGTGTAAATATAATGATGACAGTTAAAGCATTTCTTGTGTAAAGTTAGACAAGTCCAGAACCTTCAATCAAACCTCTTGCCCAGTCTAAGACTGCTGATATACAATTACACAGCAAAACCTCCAGTAAATTAACATGTATGCTGTTTATATAAGTCTAGATGGACAGAAATGAAATCTGTAGGCAGTTAATTTCCAAACTGTAAGTGTTCATTGACATTTCCTAAGaaacttacattttattttcattaattttttttttttttttttttttggaaaagcaTATTTTTCTATGCTCAGATTCTTTGTTTTGGTTAAAATGTAAGTTACCCAATGTTCATGTTAGTACAATTTCTATTCATACATTTGTTTTAACAAGTTTTATAAAAAgaagatatttgatatttttgtatgatatttaatttcaatattCTTTACTTTAactgtttgctgtttttatctttatatGCTTTTATATTATGTTGTCTATATGAAACAGAGTGTGCATACAgggttaaatgttaaaaagaaataGTGCAACATTAAAATAGGGCgtgcagacagacagcagtTTTGCAAGCTGTTGCATTAACCACAGGTTTAACAGCAATGCACGATGTCAACCTCGCTCTCAGATAACAATCTACCACACATTTCAGTTTCTAGGAAACGCTgtgtttcattattattcacaATTCTCGAGTGAGCACTCTGTCTGCAATGAAGAAACAAGCAACAGCAAGTTCATGCTTAATTCAATGCTCTTTCTTTGGCTTCATCTATAGCAACAATACATTGCTGCAATCTAAAAATCTTCCATTAATGCATTCAgttgttttgtatttgtgtatgcTTTTCATGATATGGATCTAACCAAAAAGAACAATTGTTTTTATGAAACTAATACAAATCTAACTAAAAAGAACAATCGTGACGTGTGTTTGATGAATGGGGATGAATGTGTACTTCTGAACGCTGAGTATGTATGagttaatataaaacaataaaagtgcTCTTTGCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88120 lncRNA upstream 26727 31734656 ~ 31743095 (+) True G74384
TU88103 lncRNA upstream 62386 31707228 ~ 31707436 (+) True G74370
XR_004578069.1 lncRNA upstream 223027 31544698 ~ 31546795 (+) True LOC117597165
TU88025 lncRNA upstream 236599 31531453 ~ 31533223 (+) True G74309
XR_004578070.1 lncRNA upstream 238626 31524103 ~ 31531196 (+) True LOC117597166
XR_004578059.1 lncRNA downstream 1323 31778121 ~ 31846428 (+) False LOC113540254
XR_004578058.1 lncRNA downstream 1327 31778125 ~ 31846428 (+) False LOC113540254
XR_004578061.1 lncRNA downstream 2602 31779400 ~ 31846429 (+) False LOC113540254
XR_004578060.1 lncRNA downstream 2602 31779400 ~ 31846428 (+) False LOC113540254
TU88153 lncRNA downstream 2602 31779400 ~ 31847750 (+) False LOC113540254
XM_034303620.1 mRNA upstream 16155 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 16155 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 63553 31690175 ~ 31706269 (+) True lamc2
XM_026936654.2 mRNA upstream 85355 31619845 ~ 31684467 (+) True lamc1
XM_026936824.2 mRNA upstream 159625 31596514 ~ 31610197 (+) True dhx9
XM_026936384.2 mRNA downstream 305121 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 305121 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 305121 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 305121 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 305121 32081919 ~ 32105291 (+) False LOC113540131
TU87898 other upstream 416678 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 671934 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 1002690 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 1002690 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 2146785 29619993 ~ 29623037 (+) False asip2b
LOC117597174 other downstream 169250 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 182224 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 182244 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 184071 31960869 ~ 31965136 (+) True LOC117597122
LOC117596936 other downstream 190401 31967199 ~ 31967957 (+) True LOC117596936

Expression Profile