RNA id: TU88126


Basic Information

Item Value
RNA id TU88126
length 1249
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id LOC113540254
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31778121 ~ 31847866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAACTTTGTGTGACTCGTGGTGCTGACAAGATAATTTTTGGAAAAGGGATTAAACTGCTTGTTGAAGTCGGTAAGTTAATTGCCTTTAAATGTTGATTGATCACAGCTGTGTCTGTTTCAGTTCCTACCATTAGAAGACAAAAGTCTCCGTTTCTGACATTGCAAATTTCATGCAAATCTTTTCTTGGCGTTTTATAGATTAAGGCATTAAGCCAAAATGAAAGCTATACATTAGTTTTGCTCAGTGTAAAACCAGGACAAAGACAACATAAAGATATTAGTTAAGTGCAGTGGAAAGTTAATGAAATGacacatttcactgtgtggATGCTGGGGCTGGAAATAAACTGATCTTTGGACATGGAACAAAGCTAACAATAACTTCAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88089 lncRNA upstream 12992 31769821 ~ 31775982 (+) False LOC113540067
TU88120 lncRNA upstream 45879 31734656 ~ 31743095 (+) True G74384
TU88103 lncRNA upstream 81538 31707228 ~ 31707436 (+) True G74370
XR_004578069.1 lncRNA upstream 242179 31544698 ~ 31546795 (+) True LOC117597165
TU88025 lncRNA upstream 255751 31531453 ~ 31533223 (+) True G74309
XR_004577980.1 lncRNA downstream 12210 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA downstream 12210 31859960 ~ 31863157 (+) False LOC117597031
TU88389 lncRNA downstream 359611 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 436458 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 470682 32318432 ~ 32340074 (+) True G74580
XM_034304128.1 mRNA upstream 12176 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 12176 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 35307 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 35307 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 82705 31690175 ~ 31706269 (+) True lamc2
XM_026936384.2 mRNA downstream 234169 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 234169 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 234169 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 234169 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 234169 32081919 ~ 32105291 (+) False LOC113540131
XR_004578111.1 other upstream 12176 31769822 ~ 31776798 (+) True LOC113540067
TU87898 other upstream 435830 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 691086 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 1021842 30746131 ~ 30767132 (+) True G73944
LOC117597174 other downstream 98298 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 111272 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 111292 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 113119 31960869 ~ 31965136 (+) True LOC117597122
LOC117596936 other downstream 119449 31967199 ~ 31967957 (+) True LOC117596936

Expression Profile