RNA id: TU88148


Basic Information

Item Value
RNA id TU88148
length 1037
lncRNA type inter_gene
GC content 0.35
exon number 5
gene id LOC113540254
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31778121 ~ 31847866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgATGGTTATGGAGGAAAATTGACCTTTGGCAAAGGCATAAATCTGCTGGTGCAGTCAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATATGTGCACATGCATATACTATGTACATGGCTTTATATGTATAGATCattgttcatttatatttagGTATTGTCTTTTGCACatcaaaataaatgataagTACATGAAATAATCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88089 lncRNA upstream 30744 31769821 ~ 31775982 (+) False LOC113540067
TU88120 lncRNA upstream 63631 31734656 ~ 31743095 (+) True G74384
TU88103 lncRNA upstream 99290 31707228 ~ 31707436 (+) True G74370
XR_004578069.1 lncRNA upstream 259931 31544698 ~ 31546795 (+) True LOC117597165
TU88025 lncRNA upstream 273503 31531453 ~ 31533223 (+) True G74309
XR_004577980.1 lncRNA downstream 12094 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA downstream 12094 31859960 ~ 31863157 (+) False LOC117597031
TU88389 lncRNA downstream 359495 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 436342 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 470566 32318432 ~ 32340074 (+) True G74580
XM_034304128.1 mRNA upstream 29928 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 29928 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 53059 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 53059 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 100457 31690175 ~ 31706269 (+) True lamc2
XM_026936384.2 mRNA downstream 234053 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 234053 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 234053 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 234053 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 234053 32081919 ~ 32105291 (+) False LOC113540131
XR_004578111.1 other upstream 29928 31769822 ~ 31776798 (+) True LOC113540067
TU87898 other upstream 453582 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 708838 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 1039594 30746131 ~ 30767132 (+) True G73944
LOC117597174 other downstream 98182 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 111156 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 111176 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 113003 31960869 ~ 31965136 (+) True LOC117597122
LOC117596936 other downstream 119333 31967199 ~ 31967957 (+) True LOC117596936

Expression Profile