Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU88168 |
| length | 1012 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 5 |
| gene id | LOC113540254 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 31778121 ~ 31847866 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88089 | lncRNA | upstream | 20824 | 31769821 ~ 31775982 (+) | False | LOC113540067 |
| TU88120 | lncRNA | upstream | 53711 | 31734656 ~ 31743095 (+) | True | G74384 |
| TU88103 | lncRNA | upstream | 89370 | 31707228 ~ 31707436 (+) | True | G74370 |
| XR_004578069.1 | lncRNA | upstream | 250011 | 31544698 ~ 31546795 (+) | True | LOC117597165 |
| TU88025 | lncRNA | upstream | 263583 | 31531453 ~ 31533223 (+) | True | G74309 |
| XR_004577980.1 | lncRNA | downstream | 12094 | 31859960 ~ 31863157 (+) | True | LOC117597031 |
| XR_004577981.1 | lncRNA | downstream | 12094 | 31859960 ~ 31863157 (+) | False | LOC117597031 |
| TU88389 | lncRNA | downstream | 359495 | 32207361 ~ 32207824 (+) | True | G74573 |
| TU88394 | lncRNA | downstream | 436342 | 32284208 ~ 32296534 (+) | True | G74578 |
| TU88396 | lncRNA | downstream | 470566 | 32318432 ~ 32340074 (+) | True | G74580 |
| XM_034304128.1 | mRNA | upstream | 20008 | 31759889 ~ 31776798 (+) | False | LOC113540067 |
| XM_034304129.1 | mRNA | upstream | 20008 | 31769827 ~ 31776798 (+) | False | LOC113540067 |
| XM_034303620.1 | mRNA | upstream | 43139 | 31732612 ~ 31753667 (+) | True | smg7 |
| XM_034303622.1 | mRNA | upstream | 43139 | 31732613 ~ 31753667 (+) | False | smg7 |
| XM_034303858.1 | mRNA | upstream | 90537 | 31690175 ~ 31706269 (+) | True | lamc2 |
| XM_026936384.2 | mRNA | downstream | 234053 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_026936385.2 | mRNA | downstream | 234053 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_026936383.2 | mRNA | downstream | 234053 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_034303207.1 | mRNA | downstream | 234053 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_034303208.1 | mRNA | downstream | 234053 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XR_004578111.1 | other | upstream | 20008 | 31769822 ~ 31776798 (+) | True | LOC113540067 |
| TU87898 | other | upstream | 443662 | 31351261 ~ 31353144 (+) | False | c4h22orf39 |
| TU87706 | other | upstream | 698918 | 31061730 ~ 31097888 (+) | False | spsb4a |
| TU87615 | other | upstream | 1029674 | 30746131 ~ 30767132 (+) | True | G73944 |
| LOC117597174 | other | downstream | 98182 | 31946048 ~ 31946542 (+) | True | LOC117597174 |
| LOC117597173 | other | downstream | 111156 | 31959022 ~ 31959667 (+) | True | LOC117597173 |
| TU88365 | other | downstream | 111176 | 31959042 ~ 32330845 (+) | False | LOC117597173 |
| LOC117597122 | other | downstream | 113003 | 31960869 ~ 31965136 (+) | True | LOC117597122 |
| LOC117596936 | other | downstream | 119333 | 31967199 ~ 31967957 (+) | True | LOC117596936 |
